Cyclopterus lumpus (lumpfish): 117729457
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Entry
117729457 CDS
T09199
Symbol
ptprfa
Name
(RefSeq) protein tyrosine phosphatase receptor type Fa isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04514
Cell adhesion molecules
clum04520
Adherens junction
clum04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117729457 (ptprfa)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117729457 (ptprfa)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
117729457 (ptprfa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clum01009
]
117729457 (ptprfa)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117729457 (ptprfa)
Enzymes [BR:
clum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
117729457 (ptprfa)
Protein phosphatases and associated proteins [BR:
clum01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
117729457 (ptprfa)
Cell adhesion molecules [BR:
clum04515
]
Immunoglobulin superfamily
Type II RPTP family
117729457 (ptprfa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
fn3_2
ig
Interfer-bind
Fn3_VIN3
PTP-SAK
Tc-R-P
V-set
DSPc
Y_phosphatase3
C2-set_2
PTP-NADK
PTPlike_phytase
Fn3_PTPRU
Fn3_ELFN
Motif
Other DBs
NCBI-GeneID:
117729457
NCBI-ProteinID:
XP_034386397
Ensembl:
ENSCLMG00005000384
LinkDB
All DBs
Position
4:4077009..4350802
Genome browser
AA seq
1913 aa
AA seq
DB search
MDLRCRRLWPLTRGALYLLLLARLVLPSHSESMPGFIKSPDDQTGISGGVASFVCQAVGE
PKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTATNSVGEINTS
AKLTVLEEDQIPHGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEIYWFKDFLPVDIGS
SNGRIKQLRSGALQIENSEESDQGKYECVAVNSAGTRYSAPANLYVRVRRVPPRFSIPPT
NHEVMPGGSVNLTCVAVGAPMPYVKWMSGEVELTREEEMPIGRNVLELTNIRQSANYTCV
AISSLGMIETTAQITVKALPKPPTSLTVTETTATSVTLTWDSGNPEPVSYYVIQYHAKLS
DNGFQEIDGVATTRYSIGGLSPFSEYEFRVIAVNNVGRGPPSGVVDTRTSEQAPSSPPLH
IQARMLSSSTMLVQWEPPEEPNGQIRGYRVYYSSDHDSPLSAWQKHNTDDSHLTTISGLT
ADITYSLRVLGFTSVGDGPPSDVLQIKTQQGVPAQPSGFEAEAELDSRIMLSWLWPVQDP
IIGFELLYWEDNNPTNKHHATFNPAGSYAVDGLKPDTLYMFSLAAKSEMGLGVFTQPIEA
RTAQSTPSAPPQEVRLLSLSSTSIKVSWVAPPTDSSHGEIACYSLAYLALTGEDVERHQV
SGIAADVTSYVLEDLQKWTEYLVWVRAHTDVGPGPESSAACSRTKEDVPGAPPRKVEADA
LNSTALRVTWKPPLSMKQHGQIRGYQLVYSRLENGEPHGQPVIMDVSLPDAQEAIVTGLL
PETTYSVTVAAYTTKGDGARSKAKVVTTTGAVPGKPTMMISTTIGNTALIQWQPPKEMVG
EHVGYQLQYKRAEEEAFTIKDFRKADDHFTVTGLHKGATYIFKLCGKNRAGNGEEYVKEI
STPEDVPSSYPQNLSVVGLTATSTNLAWEPPPLAERNGKVVKYAVVYRDINSQHNNTNST
TETQMTVHGLQPDTTYDIRVQAFTSKGGGPISPSIQSRTMSTSMPDLPSVFTKNFAVKAV
MKTSVLLTWEVPETYKSQVPLKILYNQQSLEVQGNLKRKLITQLQPDTDYSFVLMSRGNS
AGGLQQQVSIRTAPDLLKIKPARYQHDGENGGKVTISLSRVPSEAPVRCYYIVVVPVTPV
SLKRWENPEDMDIHELLEAGADSRLQRQKRQSQDFLQPYIAAKLDALPEIFTLGDEKTYN
GYYNKALPGQQQYRCFVLADLTDHESTFAASPFSEPIMVKLHSGMTRQTEDPEMLWVMGP
VLAVILIIIIVIAILLFKSNQERKRTSPAKDEHMAGVKDSLLAHSSDPVEMRRLNYQTQG
SSALSCPNTPRMREHPPIALCDLADYIERLKANDGLRFSQEYESVDPGQQFTWEHSNLEV
NKPKNRYANVIAYDHSRVILTPVDGVPGSDYVNANYIDGYRKQNAYIATQGPLPETLSDF
WRMVWEQRTCTIIMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTMLDTVELATYSVRTFA
LYKNGSSEKREVRQFQFMAWPDHGVPEYPTPTLAFLRRVKACNPPDAGPMVVHCSAGVGR
TGCFIVIEATLERMKHEKSADIYGHVTCMRAQRNYMVQTEDQYIFIHEALLEAATSGNTE
VPARNLYAHIQKLTQIPPGDTVTTMELEFKKLANTKAHTSRFISANLPCNKFKNRLVNIM
PFESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYMATQGPLAETTEDFWRMLWEHNSTI
VVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRT
IRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSI
VLERMRYEGVVDLFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagatgcagacggctgtggcctctcaccaggggagctctttatctcctgctg
ctggccagactggtgctgccttctcactcagagagcatgcccggcttcatcaagtccccc
gatgaccagacggggatttcgggaggagtggcgtcgttcgtgtgccaggcggtgggcgag
cccaaacctcgcatcacctggatgaagaaggggaagaaagtcagctctcagcgctttgag
gtgatagagttcgatgacggctcgggctcggtgctccgtatccagcctttgaggacccac
cgcgacgaagccatctacgaatgcacagccaccaacagtgtgggagagatcaacaccagc
gccaagctcactgtcttggaggaggaccagatcccccacggcttccccaccatcgacatg
ggcccccagctgaaggttgtggagagaacgcgcacagccacgatgctgtgtgcggccagc
ggcaatcccgacccggagatctactggttcaaagacttcctgcccgtggacatcggcagc
agcaacgggcgcataaagcagctgcgttcaggagcacttcagattgagaacagcgaggag
tcggaccagggcaagtacgagtgcgtggcagtcaacagcgccgggactcgctactctgcc
ccggctaacctttatgttcgagttcgccgcgtgcccccccgtttctcaatcccgcccacc
aaccacgaggtgatgcccggcggcagcgtcaacctgacctgcgtggcggtgggcgctccc
atgccttacgtcaagtggatgagcggcgaggtggagctcacccgggaggaggagatgccc
attggccgcaacgtcctggagctcaccaacatccgtcagtcagccaactacacctgcgtg
gccatatcgtccctgggcatgatcgagaccacggcccagatcacggtcaaagccctgccc
aagccgcccacctccctcactgtgacagaaaccacagccaccagcgtcaccctaacctgg
gactctggcaacccagaaccggtgtcctactacgtgatccagtaccacgccaaactgtct
gacaacggcttccaggaaatagacggagtggccacgacccggtacagcatcggtggcctc
agccccttctcggaatacgagttccgcgtcatagccgtcaacaacgtcggccgagggcct
cccagcggcgtcgtggacactcgcactagcgagcaggcgccctcgtcacctcctctccac
atccaggctcgcatgctgagctccagcaccatgctggtccagtgggagcctccggaggag
cccaacggccaaatcagggggtaccgggtctactacagctcggaccacgactccccgctc
agcgcctggcagaaacacaacacagacgacagccatctcaccaccatctcgggcctcacc
gcggatatcacatacagcctgagggtgctgggcttcacctccgtaggagacgggcctccc
tctgatgttctgcagatcaagacccagcagggagttccagctcagccgtctggttttgag
gctgaggccgagctggactcgcgcatcatgctgtcatggctttggcccgtccaggatcca
ataattggctttgagctgctctactgggaggataacaatcccacaaacaagcatcatgcc
actttcaacccagcaggctcctatgcagttgacggtctgaagccagacacactctacatg
ttttccctggctgcaaaatctgagatgggtttaggagtctttactcagcctattgaggcc
aggacagcccaatccaccccctcagcccctccccaggaggtacgcctgctcagcctcagc
tccaccagcatcaaggtgagttgggtggcaccacccacagacagcagccacggggagata
gcatgctactccctagcctacctagcgctcactggggaggacgtggaacgccaccaggtg
tcagggattgccgccgatgtcaccagctacgtgctggaggacctgcagaagtggactgag
tacttggtgtgggtgagggctcacactgacgtcgggcccggcccagagagctctgcagcc
tgcagcagaaccaaggaagatgtgcccggagcccctcccaggaaggtggaggcagatgcc
ctcaactccacggctctcagggtgacctggaagcctccgctgtctatgaagcagcacggc
cagatcagaggctaccagctggtctactccagactagagaacggagagcctcacggccag
ccggtcatcatggacgtttccctccccgatgcccaggaggccattgtaacaggtctgctg
ccagagacaacctactctgtgactgtggctgcttataccactaagggcgatggagctcgc
agcaaggccaaggtggtcaccaccacaggagcagtgcctggcaagcccactatgatgatc
agcaccaccatagggaacactgccctgatccagtggcagcctcccaaggagatggtcggg
gagcacgtgggataccagctgcagtataagagggccgaggaggaggcgttcaccatcaaa
gacttcaggaaggctgacgatcatttcacagtgaccggcctccacaagggagccacctac
atcttcaaactgtgcggcaaaaaccgagcgggcaacggggaggagtacgtgaaggagatc
agcacccccgaggacgttcccagcagctatccgcagaatctgagcgtggttggtctgacc
gccacctctaccaacctggcctgggagccccctcctctggctgagaggaacgggaaggtt
gtgaagtatgctgtggtgtaccgagatatcaacagccagcacaataacaccaacagcacc
acagaaacgcagatgaccgtccatggcttgcagccagacacaacctacgacatcagagtc
caagccttcaccagcaagggggggggacccatcagccccagcattcagagtcggaccatg
tccacctccatgccagaccttccctcagtgttcaccaagaactttgccgtgaaggctgtg
atgaaaacctctgtcctgctgacctgggaagtgccagaaacctacaaatcccaagtgcct
ctcaagatcctgtacaaccagcagagtttggaggttcaaggcaacctgaagaggaagctg
atcacacagctgcagccggatacagattattcctttgtgcttatgagccgggggaacagt
gccggcggcctccagcagcaggtttccattcgaacagccccagacctgctgaagataaag
ccagctcgataccaacacgatggggagaatgggggaaaagtgaccatcagtttgtccagg
gtgccttctgaagcccccgtcaggtgctactacatagtggttgtcccagtcaccccggtt
tctctgaagagatgggagaaccccgaagacatggacatacatgagctcctggaggccggt
gctgacagccgtctgcagagacagaagagacagagccaggacttcctgcagccctacatc
gctgccaagctggacgctctgcccgagatcttcaccctgggtgacgagaagacatacaac
ggctactacaacaaagccctccctggccagcagcagtaccgctgctttgttctggctgac
ttgacggaccacgaatctacgtttgcagccagcccgttctctgagcccatcatggtgaag
ctccacagtgggatgactcgacaaactgaggacccagagatgctgtgggtgatgggtccg
gtgctggcggtcattctcatcatcatcatagtcattgccattctgctcttcaagagcaac
caagagaggaaacgaacatccccagccaaggatgagcacatggcgggggtcaaagactca
ctgctggcccactcctcagaccctgtggagatgaggagactcaactatcagacacaaggt
tccagtgccctcagttgcccgaacactccaaggatgagggaacaccctccaatcgctctc
tgtgacctggcagactacatagagcggctcaaggccaatgatggtctgcgcttctctcag
gagtacgagtctgttgatccaggacagcagttcacctgggagcactccaacctggaggtc
aacaagccaaagaaccgctatgcaaatgttattgcctacgaccactccagggtcatcctc
acacctgtggacggcgttccgggcagcgactacgtcaacgccaactacatcgatggctac
aggaaacagaatgcctacatcgccacacaggggccgctgccggagacgctgagcgacttc
tggaggatggtatgggagcagaggacctgcaccatcattatgatgacccgcctagaggag
aagtcacgggtgaaatgtgaccagtattggcccagtcgaggcacagagacatatgggatg
atccaggtgaccatgctggacactgtggagctggctacgtacagcgtgcgcacatttgcc
ctctataagaatggctcaagtgagaagagagaggttcgacagttccagttcatggcctgg
cctgaccatggagtgcccgagtatcccaccccaacactagcctttctacgcagagtcaag
gcctgtaaccctccagacgctggacccatggtggtccactgcagcgccggcgtgggccgc
acaggctgcttcatcgtgatcgaagccacgctggagaggatgaaacacgaaaagtcggcg
gacatttatggtcatgtgacatgcatgcgggctcagaggaactatatggtgcagacggag
gaccaatacatattcatccacgaggccctgctggaagctgcaacgtctggcaacacagaa
gtccccgcccgaaacctgtacgcccacatccagaagctcacccagatcccccctggagac
accgtcaccaccatggaactggagtttaagaaactggccaacactaaagcacatacctca
agattcatcagtgccaacctgccgtgcaacaagttcaagaaccgcctggtgaacatcatg
ccttttgagtccacccgtgtctgcctgcagccaatcagaggggtggagggctccgactac
atcaacgccagcttcatcgacggatacaggcagcagaaggcgtacatggccacgcagggc
ccgctagccgagaccacggaggacttctggaggatgttgtgggaacacaactccaccatt
gtggtcatgctcaccaagctccgagagatgggacgggaaaagtgccaccagtactggccc
gccgagcgctcagcacgctaccagtactttgtggtggaccccatggctgagtacaacatg
cctcagtacatcctgagagagttcaaagtcacagacgccagggatggtcagtcgaggacc
atcaggcagtttcagttcactgactggccggagcaaggagtgccaaaaaccggggagggc
ttcatcgacttcatcggtcaggtccataaaactaaagagcagtttggacaagatggaccc
atttctgtgcactgcagtgctggtgtggggcggacgggtgtgttcatcaccctgagcatc
gtgctggagagaatgaggtacgagggcgtggtggacctcttccagaccgtcaagacgctc
cggacccagagaccggccatggtgcagacagaggaccagtaccaactgtgctaccgggct
gctctggagtacctgggaagctttgatcactatgcaacataa
DBGET
integrated database retrieval system
