Cyclopterus lumpus (lumpfish): 117730393
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Entry
117730393 CDS
T09199
Symbol
pkp1b
Name
(RefSeq) plakophilin-1
KO
K10387
plakophilin 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
clum04812
]
117730393 (pkp1b)
Cytoskeleton proteins [BR:
clum04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
117730393 (pkp1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
ZER1-like_2nd
TFIIA
Trypan_PARP
DUF3391
Motif
Other DBs
NCBI-GeneID:
117730393
NCBI-ProteinID:
XP_034387968
Ensembl:
ENSCLMG00005017079
LinkDB
All DBs
Position
5:21371799..21381630
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AA seq
765 aa
AA seq
DB search
MSLEPMKSALSIGNVDHTSLALPSVHQCRSGQQRVLEQVQTIRRIRSRTSSSSRTGFTSL
SPTSPLYDTSNGGLFFGNGFSQALIQEKNVNWQSVHNMKGSSVKRSTASAYQSKSGYAPL
GSMAAGQPNSGRSEPDLFWQRSPTLRSVPPPRLLSNRGTYQTARATNRFVTIASAQPQHQ
PQHQPQHQPQQQPQHQPQQQPQHQPQQQPQHQPQQQPQQQPQHQPHQQPAYVNGTGQTTS
HSQFMSQVNLTKTLPRSPVTESVPKGKEDSGSNDNSGDADITMKEAVEYLSNGDETYQHC
GASYIQHNTFIDDKAKEEVLKLNGVHLLVGLLRSSSPRVSQTASAALRNLSFKSNNNKEE
MQRSGGITEAAALLRDTDSVETQKQLTGLLWNLSSVDTLKPDLLKSALPVLMERAILPYT
TGPDRTAGNTRDPEVFFNATGCLRNLSSTKQSNRQALRRCRGLIDSLVSYVQNCLEAGTP
DDKSVENCMCILHNLTFQLEDEVPVLFSRITLLAKAANTGPGQGDGGPIGCFSPQSKSLV
HEQNFDFPVVEDPQPSGAGLLIHSTTMQSYLSLLETSQREETQEACCGALQNLTAHDSIV
SSVMSQTIVQKLNGLQVISPLLKSKKVNMQRNAVGLVGNLAKNPNLHNTIARKALPELLG
ILSAGTKEGNESDDTLAMACQTSNSLLMKEPEMAKPLLNNNLINSLKDLSQNGYLPKSSK
AAALLLFNMWSEKDVQSVLKKQGMNKSSFVNDITTAAHRSVQVVD
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggaacccatgaaatcggccctctccatcggcaacgtggaccacacgtcgctg
gcgctgccgtccgtccaccagtgccgctcgggccagcagcgcgtcctggagcaagtgcag
acgatccggaggatcaggtcgaggacgtccagcagcagcaggaccggattcacttctctg
tctccgacatctcctttgtatgacacatctaatggaggcctcttcttcgggaatggcttt
tctcaagctctcatccaagagaagaacgtcaactggcaatcagtccacaacatgaaggga
tccagcgtgaagaggagcacagcgtccgcctatcagagcaagagtggttacgcccctctc
ggctccatggcggccggtcaacccaactccggccgcagcgagcctgatttgttctggcag
cgctccccgacgctgcgctcggttcccccgccgaggctgctttccaacaggggcacctac
cagacggcgagggccaccaatcggtttgtgacgatcgccagcgcccagcctcagcatcaa
cctcaacatcagcctcaacatcagcctcagcagcagcctcagcatcagcctcagcagcag
cctcagcatcagcctcagcagcagcctcagcatcagcctcagcagcagcctcagcagcag
cctcagcatcagcctcatcagcagccggcgtacgtgaacggcaccgggcagaccacatca
cacagccagttcatgtctcaagttaacttgaccaaaacactgcccaggtctcccgtcaca
gagagtgtcccgaaggggaaagaagattctgggtcaaacgacaacagtggagatgctgat
atcacgatgaaggaggccgttgagtatctttccaacggggatgagacgtatcagcactgc
ggcgcgtcctacatacagcacaacactttcatcgacgacaaggcgaaagaggaggtgttg
aagctcaacggggtccatcttttggtgggcctgctgcgcagctccagtccacgcgtgagc
cagacggcctcggccgccctccgtaacctgtcctttaaaagcaacaacaacaaggaggag
atgcagcgctcgggtggcatcacggaggctgcggctctgctccgagacacggactctgtg
gagacacagaaacagctgacgggtctcctttggaatttgtcctcggtagacaccctgaag
ccggacctgctcaagagcgctctgcccgtcttgatggagcgtgcgatcctgccgtacaca
accggacccgaccggaccgccggcaacacccgggaccccgaggtcttctttaatgccacc
ggatgtctcagaaacctgagcagcacgaagcaaagcaacaggcaggcgctcagaagatgt
cgaggtttgatcgactctttggtcagttacgttcaaaactgcctggaggccggaacacca
gacgataagtccgtggagaactgcatgtgcatcctgcacaacctgacgttccagctggag
gacgaggttccggttctgtttagccggatcacgctgttggcgaaggccgccaacacgggc
cccggccagggcgacggcggccccatcggctgcttcagcccccagagcaaatcgttggtg
cacgagcaaaactttgacttcccggtcgtcgaggacccgcagcccagtggggccggtttg
ctgatccactccacgacgatgcagagctacctgtctctgcttgagacgagccagcgagaa
gaaacacaggaggcctgctgcggagccctgcagaacctcaccgcccatgacagcattgtc
tccagcgtcatgagccagacgattgtgcagaaactgaacggcctgcaagtcatcagtccc
cttttaaaatcaaagaaagtcaacatgcagaggaacgcagtgggtttggtaggaaacctg
gccaaaaaccccaacttgcacaacaccatagctcgtaaagcgctccccgagctgctgggc
atcctcagcgcaggcaccaaagagggaaatgagtctgatgacacgctggccatggcctgc
cagacttccaatagcctgcttatgaaggaacctgagatggccaagcccctgttaaacaac
aacctgattaactcactgaaagatctcagccagaacggatatctccccaaatccagcaaa
gctgcagccctgctcctcttcaacatgtggtccgaaaaagatgtacaaagcgtcctgaaa
aagcaagggatgaataagtcctcgtttgtgaatgacatcaccacggcggcgcacaggtcg
gtgcaagttgtggattaa
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