KEGG   Cyclopterus lumpus (lumpfish): 117731450
Entry
117731450         CDS       T09199                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, A-U alpha chain-like
  KO
K06752  MHC class II antigen
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04145  Phagosome
clum04514  Cell adhesion molecules
clum04672  Intestinal immune network for IgA production
clum05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:clum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    117731450
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    117731450
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    117731450
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117731450
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117731450
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   117731450
  Exosomal proteins of epithelial cells
   117731450
  Exosomal proteins of breast milk
   117731450
SSDB
Motif
Pfam: C1-set Ig_2 Ig_3 MHC_II_alpha ig C2-set_2 C2-set_3
Other DBs
NCBI-GeneID: 117731450
NCBI-ProteinID: XP_034389719
LinkDB
Position
5:complement(24417008..24420734)
AA seq 238 aa
MFLLVMALIGFTGAVCSSAATLHHDFHYVYGCYESGEVRVDILADEDVLAYVDFNKKELV
FWIPQLPQSVKDLKERAFKIAKSSITNCLSVMGKAKKASPGVPIREDAPDISIYSRYEAD
PGVANTLFCLADGFYPPSINFTWTKNGAEVPDGAEDLRYGHNSDGTFRRMSALSFTPRKG
DVYSCSVQHRALKRTMARSWALKARPGVSPAAGFFGVSLVLCLLGIGSGAYFCTKQPH
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtttcttcttgtgatggcgctgatcggcttcaccggagcggtttgttcttctgcagca
acgctccaccatgacttccactacgtctacgggtgctacgaatccggcgaggtgcgggtg
gacatcctcgctgacgaggacgtgctcgcctatgttgacttcaacaagaaagagttggtg
ttttggattcctcagctgccgcagtccgtgaaagacttaaaggaacgggcttttaaaatt
gccaaatctagcatcactaactgtctgagtgtgatgggcaaagccaagaaagcttctcct
ggtgtacccatacgggaagacgctccagacatctccatctacagccggtacgaggccgac
cccggcgtggcgaacaccctcttctgtttggccgacggcttctacccgccctccatcaac
ttcacgtggaccaagaacggggcggaggtcccggacggggcggaggacctgcgttacggc
cacaacagtgacgggacgttccgcagaatgtcggcgctgagcttcaccccccgcaagggg
gacgtttactcgtgttcggtgcagcatcgggctttgaaacggacgatggccaggagctgg
gcgctgaaggccaggccaggagtgagtccagcagcggggttcttcggcgtgagcctcgtg
ttgtgcctcttggggatcgggtccggagcctacttctgcaccaagcagccacattag

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