Cyclopterus lumpus (lumpfish): 117731828
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Entry
117731828 CDS
T09199
Symbol
tdg.2
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117731828 (tdg.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117731828 (tdg.2)
Enzymes [BR:
clum01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
117731828 (tdg.2)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
117731828 (tdg.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
AT_hook
Motif
Other DBs
NCBI-GeneID:
117731828
NCBI-ProteinID:
XP_034390218
Ensembl:
ENSCLMG00005020739
LinkDB
All DBs
Position
6:complement(4778569..4783895)
Genome browser
AA seq
438 aa
AA seq
DB search
MVFVLGGFPAPPQSSYLKTKEQNMEENQYTSLTVPTDYFQQWYQSSQQHPEAQHVMTYHN
MGHYAEGPSDDLVMAELSVHREPPVYQEPFYQNYNPPAQNHYQELTYQPHAREQQQPQPH
PAHLHHPQHQHTIQQLEPSVRHPPQPSAPSQVVTPVKKKRGRPPKQPVEDGKTQEEENEI
EAAKKAKRALNRFNGMSVAEVMAKTLPDVITYNLDILIIGINPGLLSAFKGRHYPNPGNH
FWKCLFLSGLTDEQLNFMHDQSLPEKYNIGFTNMVERTTPGSKDLSSKEIREGGRQLLDK
LQKYRPLIAAFNGKGIYEIFCKETFGVKAKNLDFGLQPYKIPETETVCYLMPSSSPRCAQ
FPRAQDKVHFYIKLKELRDEMKGLLPKIEVEETEYSFDLQLAKEDAKRMAIKEEQVDPEY
ESCGGLHGDASRSSNSTN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggtctttgttttgggaggattcccagcccccccccagtcttcctatttgaaaactaaa
gaacaaaatatggaagaaaaccagtatacgtcgttgacggtacccacggattattttcag
cagtggtaccagtccagccagcagcaccccgaggctcagcatgtgatgacgtatcacaac
atgggccactacgcagaagggcccagtgatgacctcgtcatggccgagctgtccgtccac
cgggaaccacccgtctaccaggaacctttttatcagaactataaccccccggcccagaat
cactaccaggagctgacctaccagccgcacgccagggagcagcagcagccgcagccgcat
cctgcccacctgcaccaccctcagcatcaacatacaatacagcagttggagccgagtgtt
cggcatccgcctcagccttctgctccctctcaagttgtgacgccggtgaagaagaagaga
gggcggcctccaaagcagccggtggaggacggcaagacgcaggaggaggagaacgagatc
gaggccgccaaaaaagccaagagggctctcaaccgcttcaacggcatgtcggtggccgag
gtcatggccaaaaccctgccggacgtcatcacctacaaccttgacattctgatcattgga
attaacccaggactgctgtcagccttcaaaggacgccattatccaaacccaggaaaccat
ttctggaaatgtctgtttctgtctgggctcactgacgagcagctcaacttcatgcacgac
cagagcctgccggagaaatataacatcggcttcaccaacatggtggagaggaccacgccc
ggcagcaaggacctctccagtaaggagatcagagaaggaggtcgacagctactcgacaag
ctgcagaaatacagaccattaatagcagcttttaatggaaaaggtatttatgaaatcttc
tgcaaagaaaccttcggcgtgaaggcaaagaatctcgactttggtctgcagccgtacaaa
atcccagaaactgaaacggtgtgctacctgatgccgtcatcgagccctcgctgtgcccag
ttcccccgcgcgcaggataaggtacatttctacatcaagctgaaggaactgcgggacgag
atgaagggcctgctacccaagatcgaggtggaagagacggagtactcgttcgacctgcag
ctggcaaaagaggatgcgaagaggatggcaatcaaagaggagcaggtggacccggagtac
gagagctgtggtgggctgcatggcgacgccagccggagcagcaactccaccaactaa
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integrated database retrieval system
