Cyclopterus lumpus (lumpfish): 117734083
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Entry
117734083 CDS
T09199
Symbol
cacna1fb
Name
(RefSeq) calcium channel, voltage-dependent, L type, alpha 1F subunit
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04020
Calcium signaling pathway
clum04260
Cardiac muscle contraction
clum04261
Adrenergic signaling in cardiomyocytes
clum04270
Vascular smooth muscle contraction
clum04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117734083 (cacna1fb)
04020 Calcium signaling pathway
117734083 (cacna1fb)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
117734083 (cacna1fb)
09153 Circulatory system
04260 Cardiac muscle contraction
117734083 (cacna1fb)
04261 Adrenergic signaling in cardiomyocytes
117734083 (cacna1fb)
04270 Vascular smooth muscle contraction
117734083 (cacna1fb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117734083 (cacna1fb)
Ion channels [BR:
clum04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117734083 (cacna1fb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
117734083
NCBI-ProteinID:
XP_034394046
LinkDB
All DBs
Position
7:complement(24743481..24806363)
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AA seq
2063 aa
AA seq
DB search
MAHSAGGEGGGEGEEEEEGGEEDGGGGDGGEGEERDAEWDEELDGEDEGVRMTRTDTLHS
TTSSTGTQRRRGLHAKKQVQGSNQVQRAPRALYCLKLNNPIRRAALSIVEWKPFDIFILL
AIFANCVALGVSKPFPEDDSNSTNHDLEQVEYVFLVIFTIETFLKILAYGLVMHPSSYIR
NGWNLLDFVIVIVGLFSVVLETMTHKSGEVATTHHVPGKPGGLDVKALRAFRVLRPLRLV
SGVPSLQIVLNSIMKAMVPLLHIALLVLFVIIIYAIIGLELFIGRMHKTCYYKQADNYVE
DDPVPCAFAGHGRQCRINGTECRGRWDGPNGGITNFDNFFFAMLTVFQCITMEGWTDVLY
WMNDAIGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQM
EEDLCGYMDWITQAEDMDELDEDGNPRPSLGDLSDKKRGKFGWFSHSSETHASLPASDTA
STNTENIDEEHTNCCQACCSQMMQISCCRTLRRWNRVCRRNCRTAVKSVTFYWLVLLLVF
LNTSLSASEHYNQPDWLTEVQDSANKVLLSLFTVEMLLKMYSLGLAHYFVAFFNRFDCFV
VCGGIVETILVEMGIMPPLGISVLRCVRLLRIFKVTRHWTALSNLVASLLNSMKSIASLL
LLLFLFLIIFALLGMQLFGGKFNFDETQTKRSTFDAFPQALLTCFQILTGEDWNMVMYDG
IMAYGGPVFPGMIVCVYFVILFICGNYILLNVFLAIAVDNLAGGDGDKKEKKTEVAEQEE
KVGEGEGGEEQGQQGQEEEVKVEMDEDTEYEEEEEPPEGEEDAVVQLKIADLAPPKEKVL
PIPEGSAFFCMSNTNPIRVACHTLIHHHIFTNLILVFIILSSCSLAAEDPIRAHSFRNNI
LGYADYAFTSIFTVEILFKMAVHGAFLHQGSFCRNWFNLLDLLVVSVSLVSFFLHSSAIS
VVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIMIVTTLLQFMFACIGVQLFK
GKFYRCTDEAKHTPEQCKGTFVVYKDGDVNHPMVRERIWLNSDFNFDNVLMGMMALFTVS
TFEGWPALLYKAIDANGENSGPIYNYRVEISIFFIVYIIIIAFFMMNIFVGFVIITFREQ
GEQEYKNCELDKNQRQCVEFALKAQPLKLYIPKNPVQFKFWSIINSTGFEYIMFVLILLN
TVTLAVQHYEQSKNFSHIMDILNMVFTGLFTAEMLLKLLALRLRHYFVDAWNSFDALIVV
GSVVDIVVTEFSSGEDSSRVSITFFRLFRVMRLVKLLSKGEGIRTLLWTFIKSLQALPYV
ALLIAMIFFIYAVIGMQTFGKVAMQPHTQINRNNNFQTFPQAVLLLFRCATGEAWQEIML
ASLPGKRCDPESDYEPGEEFSCGSNFAIVYFISFFMLCAFLIINLFVAVIMDNFDYLTRD
WSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVALLRRIQPPLGFGKLCPHRVACKRLVA
MNMPLNADGMVTFNATLFALVRTALKIKTEGNPDQENEELRGIIKKIWKRMKPKLLDEVI
PPHEEEEVTVGKFYATFLIQDYFRKFRKRKEQGDLTGESDTTNPSAIQLCKAGLKTLQDL
GPEMRLALNEDLEYEDEAMMEDEELEEDAAYQGGDGVGPERDRRGSALATPTGPAGPGGP
AGDGGVSNGGLVHRVGSLTKMPNGSDRDEHLRRGDDARSSVNLHHHRHHRRPSAKNGLLD
HGDHKRPRHKTTRRDSRDRYWRNGDLEAYGEQGYYSREEDNDSITSRDRHYPDEPPLYRD
HYDGHAPYPNSSYGNGYSEARRTTRRRLLPATPTGRKPSFNIQCLRRQGSSDDLPIPGTY
HPTSPPRRTRTQTFSSYESRLSSGRSSAASSASWANPCPRRGRLLYAPLILVEEEGGAGR
GVNITGAAPRPAWYGGPAGTSAPPPYRAYTTLRVPSQLGGQLAEKRGSADSLVEAVLISE
GLGLYARDPKFVAFAKREIADACHMTVDEMESAASDLLGTGSHGLLSAAAAADPAALYSD
EEPIRTGRDEDELADEMTCVTSF
NT seq
6192 nt
NT seq
+upstream
nt +downstream
nt
atggctcatagtgctggaggagagggaggaggagagggtgaggaagaggaggaaggagga
gaggaggatggaggaggaggagacggaggagaaggagaggagagggatgcagagtgggac
gaggagctggacggagaggacgagggagtgaggatgacgaggaccgacacgcttcactcg
accacgagttcaaccgggacacagcgaagaagaggactacacgctaagaaacaggtccag
ggcagtaatcaggtccagagagctccgagagctttatactgtctaaaactcaacaatcca
atcagacgagccgctctctccattgtagagtggaaaccttttgacatcttcatccttttg
gccatctttgctaactgcgtcgctctgggagtctctaaaccgtttcctgaggacgactcc
aactccaccaaccacgacctggaacaagtggagtacgtcttcctcgtcatcttcaccatt
gagaccttcctgaagatcctggcctacggtctggtgatgcaccccagctcctacatccgc
aacggctggaacctgctcgacttcgtcatcgtcatcgtcggtttgttcagcgtcgtcttg
gagacgatgactcacaagtccggcgaggtggcgacgactcaccacgtgccgggaaaacct
ggaggtctggatgtgaaagctctgagagccttcagggtcctgaggcccctcagactggtt
tctggggtccccagtctgcagatcgtactgaactccatcatgaaggcgatggttcctctc
ctccacatcgctctgctggtcctcttcgtcatcatcatctacgccatcatcggtctggag
ctcttcatcggacgcatgcacaaaacctgctactacaaacaagcagataactacgtggag
gacgaccccgtgccgtgcgccttcgccggtcatggccgtcagtgcagaatcaacgggacg
gagtgccgggggaggtgggacggccccaacggggggatcaccaacttcgacaacttcttc
tttgccatgctgacggtgttccagtgcatcacgatggagggctggaccgacgtcctctac
tggatgaacgacgccatcggcttcgagctgccgtgggtttacttcgtcagtctggtgatc
tttggatccttcttcgtcctcaacctggtcctaggagtcctcagcggagagttcagtaag
gagagggagaaggcgaaggctcggggagacttccagaagctgagggagaagcagcagatg
gaggaggacctgtgtggctacatggactggatcactcaggccgaggacatggacgagctg
gacgaggacgggaacccacgtccgtctctgggagatctgtcagacaagaagagaggaaag
tttggatggttcagtcactccagtgagacacacgctagtcttcctgccagtgacacagca
tctacaaacacagaaaacattgatgaagaacacaccaactgctgccaggcctgctgctcc
cagatgatgcagatcagctgctgccggacgctgcggcgctggaaccgagtctgccgcagg
aactgtcgcaccgccgtgaagtcggtgactttctattggctggttctgctgctcgtcttc
ctcaacacctccctcagcgcctcggagcactacaaccaacctgattggctgacagaggtc
caagacagcgccaacaaggtgctgctgtccctgttcaccgtggagatgctcctgaagatg
tactctctgggcctcgctcactacttcgtggcgttcttcaaccgcttcgactgcttcgtg
gtgtgcggcggcatcgtggagaccatcctggtggagatgggcatcatgccgccactcggc
atctccgtgctgcgctgtgtacgcctgctgaggatcttcaaggtcacacgccattggacg
gctctgtccaacctggtggcgtcgctgctgaactccatgaagtccatcgcctcgctgctg
ctgctgctcttcctcttcctcatcatcttcgctctgctcggcatgcagctgttcggaggg
aagttcaacttcgacgagacgcagacgaagaggagcaccttcgacgcctttcctcaggcg
ctgctcacctgcttccagatcttgaccggggaggactggaacatggtgatgtatgacggc
atcatggcgtatggcggccccgtgtttccggggatgatcgtgtgcgtttacttcgtcatc
ctcttcatctgcggtaactacatcctgctgaacgtcttcttggccatcgcggtggacaac
ctggcaggaggagacggagacaagaaggagaagaagacagaagtagcggagcaggaggaa
aaagtcggagaaggagaaggaggagaagaacaagggcaacaaggacaggaagaggaagta
aaggtggaaatggacgaagacaccgagtacgaggaggaggaggaacctcctgaaggagaa
gaggatgccgtagttcaattaaagatagctgacctggctcctcctaaagagaaggttctt
ccaatcccagaaggcagtgcgttcttctgcatgagcaatacgaaccctatccgagtggcc
tgtcacactctgatccaccaccacatcttcaccaacctcatcctcgtcttcatcatcctc
agcagctgctcattggctgctgaggatccaatcagagcccactccttcaggaacaacatt
ctgggttacgccgactacgccttcacctccatcttcactgtggagattctgttcaagatg
gcggtccacggagcgttcctccaccaaggctccttctgcagaaactggttcaacttgttg
gatctgctggtggtcagcgtctctttggtctccttcttccttcactccagcgcgatctca
gtggtgaagatcctccgagtcctccgagtgctgagacctctgagggccatcaacagggcc
aaaggactgaagcatgtagtccagtgtgtgttcgtggccatcaagacaataggaaacatc
atgatcgtcacgacgctgctgcagttcatgttcgcctgcatcggagtccagctattcaag
ggtaaattctatcgctgcacagacgaagccaaacacacccctgaacagtgcaaagggacc
ttcgtggtgtataaagatggagatgtgaaccacccgatggtccgggagaggatctggctg
aacagcgactttaactttgacaacgtgttgatggggatgatggcgctcttcaccgtctcc
accttcgagggctggcccgcgctgctgtacaaagccatcgatgccaacggggagaactct
ggacccatctacaactaccgagtggagatctccatcttcttcatcgtctacatcatcatc
atcgccttcttcatgatgaacatctttgtgggttttgtcatcatcaccttcagagagcaa
ggagagcaggagtacaagaactgtgagctggacaagaaccagcgtcagtgtgttgagttc
gccctgaaggcccagcccctgaaactctacatcccaaagaacccggttcagtttaagttc
tggtccatcatcaactccacggggtttgagtacatcatgttcgtgctcatcctgctcaac
accgtcacgctggctgttcagcattacgagcagtcgaagaacttcagccacatcatggac
atcctcaacatggtgttcactggcctcttcacggcggagatgctgctgaagctgctggct
ctcaggctcaggcattacttcgtggacgcgtggaactcgttcgacgctctcatcgtagtc
ggtagcgtcgtcgacatcgtggtcaccgagttcagtagtggggaagacagctctcgggtg
tcgatcacttttttccgtctgtttcgagtgatgcgattggtcaagctgctgagcaaaggg
gaggggattcgtacacttctctggactttcatcaaatcactgcaggctctgccgtacgtc
gctctgctcatcgccatgatcttcttcatctacgccgtcatcgggatgcagacctttggg
aaggtagccatgcagcctcacactcagatcaacagaaacaacaacttccagacatttcct
caggctgtcctcctcctcttcaggtgtgcgacaggtgaggcctggcaggagatcatgctg
gccagtcttccaggtaaacgctgtgaccccgagtcggactacgaacccggagaagagttc
agctgtggaagcaactttgccattgtttacttcatcagcttcttcatgttgtgtgctttc
ctgatcattaacctgtttgtcgccgtcatcatggacaactttgactatctgacgcgtgat
tggtcgattctgggaccgcatcacctggacgagttcaagaggatctggtccgaatatgat
ccagaggccaagggtcgtatcaaacacctggacgttgtggctctgctcaggaggattcag
cctcctctgggctttgggaaactctgtcctcacagagtggcgtgtaagcgcctcgtggcc
atgaacatgcctctgaacgctgacggcatggtgacctttaacgccacgctgttcgctctg
gttcgcaccgccctcaagatcaagactgaaggtaaccctgaccaggagaacgaggagctg
agggggatcatcaagaagatctggaagagaatgaaaccaaaactactggatgaagtaata
ccaccgcatgaagaggaggaagtgacagtcgggaagttttacgcaacgttcctgattcag
gattacttcaggaagttcaggaagaggaaagagcaaggagacctgacgggagagtctgac
accaccaacccgtctgccattcagctgtgcaaagccggcctgaagactctgcaggatctg
ggtccagagatgcgcttggccctgaacgaggacctggagtacgaggacgaggccatgatg
gaggacgaggagctggaggaggacgctgcgtatcagggcggcgacggcgtgggaccagag
agggaccgccgaggctccgccctggccacgcccactggtcccgcaggtcccgggggaccg
gcgggggacggcggcgtgtccaacggcggtctggtccaccgggtcggttccctcaccaag
atgccgaacggcagcgaccgcgacgaacatctgcggcgcggagacgacgcgaggtcgtcc
gtcaatcttcatcatcatcgtcatcaccgccggccgtcagcgaagaacggcctgctggac
cacggagaccacaagagaccacgtcacaagaccaccaggagggactccagggaccggtac
tggaggaacggggacctggaggcctacggagagcagggctactacagccgggaggaggac
aacgacagcatcacctccagagacagacactaccctgacgagcctcctctgtacagagac
cactatgatggccacgccccctaccccaacagtagctatggtaacgggtacagcgaggcc
aggaggacaacccggcgacgcctacttcctgccacgcccacaggtcggaagccgtcattc
aacatccagtgcttgaggaggcagggcagcagtgacgacctgccgatccccggaacctat
caccccacctcaccgccacgccgcacacgcacacagacgttcagcagttacgagtctcgg
ctctcctccggtcgctcctcggcagcctcctctgcgtcctgggcgaacccgtgtcctcgc
cgcggtcgcctcctctacgctccgctcatcctggtggaggaggaaggaggtgcaggaaga
ggtgtcaacatcacgggtgcagcacccagaccggcctggtacggtggccctgcagggact
tcagctccgcccccttacagagcctacaccaccctcagagttccctcccagctcggcggc
cagctggcggagaagcgcggatcggccgacagcctggtggaggcggtcctgatctcggag
gggctcggcctttacgcccgggatcccaagttcgtggcgtttgccaagcgggagatcgcc
gacgcgtgtcacatgacggtggacgagatggagtcggccgccagcgaccttctcggcacc
gggagccacggtttgctcagcgccgccgccgccgccgaccccgccgcgctctacagcgac
gaggagccaatcaggacgggccgcgacgaggacgagctggccgacgagatgacctgcgtg
acgtcattctga
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integrated database retrieval system
