Cyclopterus lumpus (lumpfish): 117735221
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Entry
117735221 CDS
T09199
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117735221 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117735221 (eftud2)
Spliceosome [BR:
clum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117735221 (eftud2)
Complex C
U5 SnRNP specific factors
117735221 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
117735221
NCBI-ProteinID:
XP_034395616
Ensembl:
ENSCLMG00005010922
UniProt:
A0A8C2XQN8
LinkDB
All DBs
Position
8:16478070..16490447
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLDAGDRDVDEGDDDEDDEPADADEDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKRFTLMEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSAPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRLSDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIGELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSVCFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVHHIPSPQEGARNKIEHTYAGGLDTDLGEAMVECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgacgagtttggaaactacatcggtccagagctggactctgat
gacgatgaagatgatctggatgcaggggacagagatgttgatgagggtgatgatgacgaa
gatgatgagcctgctgatgctgatgaggatgtccctggtatggaggtggtcctgcatgag
gacaagaagtactatcctacagcagaggaggtttatggacccgaagtggaaactatagtc
caagaggaagacacacaacctctcacagagcccatcatcaagcctgtgaagaacaagcgg
ttcaccctgatggagcaggagttacctgccactgtttatgatatggaattccttgccgat
ctgatggatggtcccgagctaatccgtaacgtcaccctgtgtggtcatcttcaccacggc
aagacctgtttcgtggactgcctgattgaacagacgcacccagaaatcaggaagagagac
gatgttgatctccgatacacagacatcctctttacagaacaggagagaggcgttggtatc
aagagcgctcctgtcacaatggtcctgccagactccagaggaaaatcctaccttttcaac
atcatggatacaccaggccacgtgaacttctctgatgaggtcacttctagcatccggctt
tcagacggtgtagtcctcttcatagatgcagcagaaggagtgatgctgaacacagagcgc
ctgatcaaacatgcagttcaggagcgtatggccatcaccatctgcatcaacaaggtggac
cggctcattggggagctcaaattgcctcccacagatgcttattataaacttcgccacatt
gtggatgaggtcaatggtttgctcagcacttactccacagatgagaacttggtggtgtcg
cccctccttggaaacgtgtgctttgccagctctcagtacagtgtctgcttcactctgggg
tcctttgcaaagatctactcggacacctatggtgacatcaactataatgagtttgccaag
aggctttggggagacatttatttcaaccccaaaactcgcaagttcacaaagaaagctccc
agcagcaactctcagcgcagctttgtggaatttgttctggagcctctctacaaaatcctc
tcacaggtggttggggacgtggacacgtctctgcccagagttctggatgaactggggatc
caccttactaaagaggagctgaagctgaacatcagacctttgctgaggctggtctgtaac
cgcttctttggagagttcactggctttgtggacatgtgtgtacatcacatcccctcacca
caggagggtgctaggaacaagatagagcacacatacgctggaggtctggatacagacctt
ggggaggccatggtcgagtgcgaccctgatggtcctttgatgtgccacaccaccaagatg
tacagcacagaggatggggttcagttccatgcgtttggcagagtgctgagcgggaccatt
caggcaggtcagcctgtcaaggttttaggagagaactacacccttgaagatgaggaggac
tcccaggtctgcactgtgggccgtctctggatttcagttgccagataccaaattgaagtg
aaccgagtgcccgctggcaactgggttctaatcgaaggttgcgaccagccaatcgtcaag
accgcaacaatcacggagcccagagggaacgaagaggctcagattttcaggccactgaag
ttcaacacagcatcagttataaagatcgcagtggagcccgtcaacccatcagagctaccg
aaaatgttggacggactaaggaaggtcaacaagagctatccgtctctcaccacaaaggtg
gaggaatctggagagcatgtgatcttagggacaggagagctctacctggactgcgtcatg
cacgacttgcgcaagatgtactctgagatcgacattaaagttgctgaccccgtcgtgact
ttctgtgaaacggttgtagagacctcatcactcaagtgcttcgctgaaacgccaaacaaa
aagaataagatcaccatgattgcggagcccttggagaaggggctggctgaggacatcgag
aacgaagtggtgcagatcacatggaacaggaaaaagctgggagagttcttccagaccaag
tacgactgggatctgctggctgccaggtccatctgggccttcgggccggacaccacggga
ccaaacatccttgtagatgacaccctgccctctgaggtggacaaggcgctgctcggctcg
gtcaaagacagcatcgttcagggcttccagtggggcaccagagaggggcctctgtgtgat
gagcccatcaggaatgtcaagtttaagatcctcgacgcagtcattgctcaggagcctctg
cacagaggaggcggccaggtcatcccgacagccaggagagtggtgtactctgctttcctc
atggccactccaaggttgatggagccctattactttgtagaggttcaggctccagctgat
tgtgtatccgcggtctacacagtgctggctcgaagaaggggtcatgtcacccaggatgca
cctattccagggtctcctctctacaccataaaggctttcatcccggccatcgactccttc
ggctttgagacagaccttcgcacacatacacagggacaggctttcgccctgtctgtgttc
caccactggcagattgttcccggtgatccgctggacaagagtattgtgatcaggcctctt
gagcctcaacctgccccccacctggccagagagttcatgatcaagacccgaaggcgcaag
ggtctgagtgaggatgtgagcatcagcaagttcttcgacgatcccatgttgttggagctg
gccaaacaggacgtggtgctcaactacccaatgtga
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