Cyclopterus lumpus (lumpfish): 117737933
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Entry
117737933 CDS
T09199
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04020
Calcium signaling pathway
clum04510
Focal adhesion
clum04540
Gap junction
clum04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117737933 (pdgfrb)
04020 Calcium signaling pathway
117737933 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117737933 (pdgfrb)
04540 Gap junction
117737933 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
117737933 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
clum01001
]
117737933 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
clum04090
]
117737933 (pdgfrb)
Enzymes [BR:
clum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
117737933 (pdgfrb)
Protein kinases [BR:
clum01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
117737933 (pdgfrb)
CD molecules [BR:
clum04090
]
Proteins
117737933 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
Adeno_E3_CR1
Ig_6
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
RIFIN
C2-set_2
Ig_VEGFR-1-like_5th
AMP-binding_C_2
G6B
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
117737933
NCBI-ProteinID:
XP_034400081
Ensembl:
ENSCLMG00005016522
LinkDB
All DBs
Position
10:complement(11985207..12001312)
Genome browser
AA seq
1138 aa
AA seq
DB search
MLVDQEQKEPDIVALSWCSEASNTSTEYSALKASTMRRVTASTLHLTVTVTALLYFCTEL
RCLEITPDDKELVLSEGSSLTLTCSGSEDTKWEFKRDDVPYFQAEQVQNDGQSYQIVQSS
ITSSVLTLWNVSWKHTGVYQCTDRHTGETKEVAVFVPDPDVWFIESSHGMVTKTSEESTI
PCVVTNPNITVTLHEKETDLPIRGLYVPSEGYKAPLEDRTYVCRGELNNEVKESQAFYVF
SIVVPEAIDAYINASKTILKQGEPLTVNCTVHGVELVFFSWDIPNREVVDVEPLTDFLPV
MTMRSCLIFPSATVAHSGHYICHVHESIQDQRASASVNITVLERGFVDVKTAPQKNISAK
LQENVELRVEVEAYPPPQVRWSKDGASIKGDKTITTRREHEIRYVTLLTLVRVRKEQKGR
YSVLVTNGDDTKEVTFDLEVQVPSQIKDLTDHHLPGKRHLVTCVAEGVPTPTIQWYSCDS
MHRCSNQTAVWQPLIPELEVLSIRTNVSYSETRKTSQVRSQVTFHKPQQVTVRCETSNQA
GLIDRRDVKLVSSTLYSQVAVLAAVLALVVIIIISIIILVAVWRKKPRYEIRWKVIESVS
QDGHEYIYVDPIHLPYDLAWEMPRDNLMLGRTLGSGAFGRVVEANAYGLAHSQSSTKVAV
KMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKNGPLYLVTEYCRYGDLVDYL
HRNKHTLLQDQAEKNQDDGCLISGGSTPLSQRKGYVSFGSESDGGYMDMSKDEPTIYVPM
QEQMDTIQYADIQPSPYESTYQQNIYQEQGGSRLDLAISDSSILTHDDLLGFSYQVAKGM
EFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYISKGSTFLPLKWMAPES
IFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKRGYRMAKPAHASDEVY
DIMKKCWDEKYEKRPEFSFLVHSVGNMLADSYKKKYSQVNDNFLKSDHPAVTRTKPRLSS
PFPIANPAFGAPSPHYLPPDTYNQSLSPGEYRQDADTQEAITSYNEYIIPIPDPKPEDVF
PDVPSESPARSVALEEETDSTSRVTADTLPEEDKMEETSERDALLGLSETPEVEDSFL
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgctggtggaccaggaacaaaaagagccggacattgtcgctctgtcctggtgcagcgag
gcatcaaatacctccacagaatacagtgcattgaaggcttccaccatgaggagggtgacg
gcatccacgctccatctgactgtcacagttacagctctcctctatttctgcaccgagctg
cgttgtctggagatcacacccgatgacaaggagctcgtcctgtctgagggctcctctctc
accctcacctgctccggctcagaagacacaaagtgggagttcaagcgggacgatgtgccg
tacttccaagcggaacaagttcaaaacgatggtcaaagctaccaaattgtgcaaagcagc
atcacatccagtgttttgaccttgtggaacgtgagctggaaacacacgggggtgtatcag
tgcaccgaccgacacactggagaaactaaggaggtggctgtttttgtcccagaccctgat
gtgtggttcatagagagctcacacggcatggtaacaaagaccagtgaggagagcaccatc
ccctgcgtggtgaccaatccgaacatcactgtcaccctgcatgagaaggagactgatctg
cccatcagggggctttatgttcctagtgaggggtacaaggcaccgctggaggacaggacc
tatgtgtgtcggggagagctgaacaacgaggtgaaagagtctcaggccttctacgtcttc
agcattgtggtccccgaggccattgacgcctacatcaatgcgtcaaagaccatcctgaaa
cagggcgaaccgctgacagtaaactgcacagtgcacggagtggagctggtgtttttttcc
tgggatatccccaacagagaggttgttgatgtcgagccactaacagacttcctgcccgtc
atgaccatgcgctcctgcctgatcttccctagtgccacggtggcccacagcggacactac
atctgccatgtccacgagagtatccaagaccagagggcctctgccagcgtcaacatcact
gtgctcgagcgaggcttcgtggatgtgaagactgctccgcaaaaaaatatttcagccaag
ctgcaagagaacgtggagttgagagtggaggttgaggcctaccctccccctcaggtccgc
tggagcaaagacggcgcctcaatcaagggagataaaaccatcacaactagacgagagcat
gagatcaggtatgtcactctgctcaccttggtgagagtgaggaaggagcagaaaggccgc
tactcagtccttgtcacaaacggagatgacacaaaggaagtgacctttgacctggaggtc
caagttccctctcagattaaagacctgactgaccaccacctccctgggaaaagacacttg
gtgacctgtgtcgctgagggggtcccaaccccgaccatccagtggtacagctgtgacagc
atgcaccggtgtagcaaccaaacagcggtgtggcagccgctgataccagagctggaggtg
ctgagcatccggaccaatgtcagctacagcgagactcgcaaaaccagccaggtgcggagc
caggtgaccttccacaagccccagcaggtcacagtgcgctgtgaaaccagcaaccaagca
ggactcatcgacagaagagacgtcaaactggtgtccagcacactctactcccaggtggca
gtattggctgctgtcttagccttagtggttatcattatcatatctatcatcatcctcgtt
gctgtgtggagaaagaaacctcgctatgagatcagatggaaggtgatagagtcagtgagc
caggacggtcatgagtacatctatgtggaccccatccacctgccctatgacctggcctgg
gaaatgccaagagacaacctgatgcttggtcgcactcttggatcaggagcctttggcagg
gtggtcgaggccaatgcatatggtctcgctcattcccagtccagcacaaaagtggctgtg
aaaatgctgaaatccacagccaggaggagtgagactcaggctctgatgtcagagttgaag
atcatgagtcacctgggtcctcacctcaacatcgtcaacttgctgggagcttgcaccaaa
aatggccctctgtatctggttacggagtactgtcgctatggcgacctggtggactacctg
cacaggaataagcacaccctcctgcaggaccaagcagagaagaaccaagacgacggctgc
ctcatctctggagggagcactccgctcagccagaggaaaggctacgtgtcctttggaagt
gagagtgatggaggatatatggacatgagtaaagatgagcccaccatctacgtgcccatg
caggagcagatggacaccatccagtacgcggacatccaaccctctccatacgagtcaacc
taccagcagaacatctatcaggaacaaggtggcagcagactggacctggccatcagcgac
tcttccattctcacccatgacgatctgttgggcttcagctatcaagtggcaaaggggatg
gagtttctcgcctccaagaattgtgtccatcgggacctcgctgctaggaatgtgctgatc
tgcgagggcaaactggtgaagatctgtgactttggcctggccagagacatcatgcatgat
tccaactacatctctaaaggcagcaccttcttgcccttgaagtggatggcaccagaaagt
attttccataatttgtacaccaccctgagcgacgtgtggtcatacggcattcttctttgg
gagattttcactctgggaggaaccccctaccctgatttgcccatgaatgagttattctac
agtgctttgaaacgaggctaccgaatggccaaacctgcacacgcctctgatgaagtttat
gacatcatgaagaagtgctgggacgagaagtatgagaaaaggccggagttctcctttctg
gtccacagcgttgggaacatgctggcagacagctataaaaagaaatacagtcaagtcaat
gacaacttcctgaagagtgaccacccggcagtcactcgcaccaaacccagactctcctcc
ccctttccgatcgccaacccagcctttggcgccccttcccctcattacctccccccggac
acctacaaccagagcctgagccctggagaataccgacaagacgcagacacacaggaagcc
ataacttcatacaacgaatacatcattcccatccccgaccctaagccagaggacgttttc
cctgatgtgccgtcagaaagccctgcaaggtctgtggctctggaggaggagaccgactcc
acgtcgcgagtcacggcggacactctcccagaggaggacaagatggaggagaccagtgag
agagacgctctgttgggtctttctgagacacctgaggtagaagacagcttcttatag
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integrated database retrieval system
