Cyclopterus lumpus (lumpfish): 117738620
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Entry
117738620 CDS
T09199
Symbol
ext1c
Name
(RefSeq) exostosin-1c
KO
K02366
glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:
2.4.1.224
2.4.1.225
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum00534
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
clum01100
Metabolic pathways
Module
clum_M00059
Glycosaminoglycan biosynthesis, heparan sulfate backbone
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
117738620 (ext1c)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
clum01003
]
117738620 (ext1c)
Enzymes [BR:
clum01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.224 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
117738620 (ext1c)
2.4.1.225 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase
117738620 (ext1c)
Glycosyltransferases [BR:
clum01003
]
Glycan extension
O-Glycan
117738620 (ext1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_transf_64
Exostosin_GT47
RXYLT1_C
Motif
Other DBs
NCBI-GeneID:
117738620
NCBI-ProteinID:
XP_034400461
Ensembl:
ENSCLMG00005022805
LinkDB
All DBs
Position
11:complement(5300843..5364446)
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AA seq
740 aa
AA seq
DB search
MQARKKYGLLGLCACCWLVFFYWGGGVQLRLLRLLTRQRGEVVRPWPNWTDRAFLPRYAH
LDELQTDPGTAESPRQRRQAWSAIYKDSRCRMETCFDFSRCRRRGREGFRVYVYPSEKND
RVSESYRKILTSIAESRYYTSDPREACLFVLGIDTLDRDQLSGQFLPNVDERIRGYPLWN
DGRNHLIFNLYSGTWPNYTEDLGFNIGQAILAKASLNAEHFRPGFDVSIPLFSKDHPQKG
GERGWLVRNATPPRRKYLLMFKGKRYLTGIGSDTRNALHHIHNGKDIVSLTTCRHGKDWE
KHKDARCDHDNLEYERFDYQELLRNSTFCLVPRGRRLGSFRFLESLQAACVPVLLSNGWE
LPFSDVIQWNQAVIEGDERLLLQVPSTVRAVGNERVLALRQRTQMLWEAYFSSVDKIVLT
TLEIIKDRVFSHISRNKYMWNSLPGGLLVLPEYSTHLTHFPFYYLGLGVSPGQEFTAVIH
AISPLVSQSQPIMKLLQVVSKSKYCSQIIILWNSEKPLPSRSKWPPMPVPLTVTDGRRKT
TSRFLPHVAIETEAVLSLDEDTVLLTSEVNFAFLVWRSFPERIVGYPPRSHFWDPLKRAW
GYTSKWTNDYSIVLTGAAFYHRYYHYLFSHYLPQSLRTLVDRTSNCEDILMNFLVSAVTH
LPPIKVAQRKQYKELPSPQGTKSVPWANPEHFNQRQECVNTFAGWFGYMPLVHSQFRLDP
VLFKDQVSVLRKKYKDLERA
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgcgtaagaagtatggtctgctgggcttgtgtgcgtgctgctggctggtcttc
ttttactggggtgggggagtccagctgcgtctgctccggctgctgacacgccagcggggt
gaagtggtgcgcccgtggcccaactggaccgacagggccttcctgccccgctatgcccac
ctggatgagctccagacggaccccgggacggccgagtcgccccgccagcgtcgccaggcg
tggtccgccatctacaaggacagtcgctgccgcatggagacctgtttcgacttctcgcgg
tgtcgccgcagagggcgggaagggttccgggtgtatgtatatccgtcggagaagaatgac
cgcgtgtccgaaagctacaggaagatcctgacgtccatcgccgagtcccggtactacacg
tcggacccgcgcgaggcatgcctgttcgtgctcgggatagacacgttagatcgggaccag
ctgtcaggacagtttttgcccaacgtggacgaacgcatccggggttacccgctgtggaac
gacgggcggaaccacctgatcttcaacctgtactcgggcacgtggccaaactacacggag
gacctgggcttcaacatcggccaggccatcttagctaaggccagcctcaacgcggaacat
ttccggccgggcttcgacgtctccatcccgctgttctcaaaggatcacccgcagaagggc
ggcgagcggggctggctggtgaggaacgccacgccgccgcgaaggaagtacctgctgatg
ttcaaggggaagcgttatctgacgggcatcggctccgacaccagaaacgctcttcaccac
atccataatggaaaggacattgtgtcgttgacgacgtgccgccacgggaaggactgggag
aagcacaaagacgcccgctgtgaccatgacaacctggaatatgagaggtttgattaccag
gagctcctccgaaactccaccttctgcttggtgcctcgaggccgacgcctgggctccttt
cgcttcctggagtctctacaggcggcgtgtgtcccggtgctgctgagtaacggttgggag
ctgccgttctccgatgtcatacagtggaaccaggcggtcattgagggagatgagaggtta
ctgctacaggtgccatccacagtgcgagcagtagggaatgagagagtcctggccctcaga
cagaggacccagatgctgtgggaagcgtacttttcctctgtggacaagatagtcctcacc
acactggagatcattaaggaccgcgtgttctctcacatatcgaggaacaagtacatgtgg
aactcgctgccgggaggtctgctggtcctgccggagtactccactcacctcacgcatttc
cctttctattacctgggattaggggtcagtccgggtcaggagttcactgcagtcatccat
gccatttccccgctggtctcccagtcccagccaatcatgaagctgcttcaggtggtctcc
aagtcaaaatactgctcccagatcattattctctggaacagcgagaagccgctacccagt
cggagcaaatggccccccatgcccgtccctctcacagtgacagacggcaggaggaagacc
accagtcggttcctacctcacgttgccatagagacggaagccgtgctgagcttggacgag
gatacggtcctgctgaccagtgaggtgaactttgccttcttggtgtggcggagcttcccc
gagcggatcgtaggctacccccccaggagccacttctgggatcccctgaagcgcgcctgg
ggctacacctccaaatggaccaacgactactccatcgtcctgaccggagccgctttctac
cacaggtactaccactacctgttctcccactacctgccccagtctctacgcactctggtg
gatcgcacctccaactgcgaggacatcctcatgaacttcctggtctccgctgtgacccac
ctgccgccgatcaaagtggctcaaaggaagcagtacaaggagctgcccagtccgcagggt
acaaagagtgtcccctgggccaacccggagcacttcaaccagcggcaggagtgcgtcaac
accttcgccggctggtttggctacatgcctctggtccactcccagtttcgcctggacccc
gtgctcttcaaagaccaagtgtctgtcctccgcaagaagtacaaggacctggagagggca
tag
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