Cyclopterus lumpus (lumpfish): 117740351
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Entry
117740351 CDS
T09199
Symbol
traf2b
Name
(RefSeq) LOW QUALITY PROTEIN: TNF receptor-associated factor 2
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04137
Mitophagy - animal
clum04141
Protein processing in endoplasmic reticulum
clum04210
Apoptosis
clum04217
Necroptosis
clum04621
NOD-like receptor signaling pathway
clum04622
RIG-I-like receptor signaling pathway
clum04920
Adipocytokine signaling pathway
clum05132
Salmonella infection
clum05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117740351 (traf2b)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117740351 (traf2b)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117740351 (traf2b)
09143 Cell growth and death
04210 Apoptosis
117740351 (traf2b)
04217 Necroptosis
117740351 (traf2b)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117740351 (traf2b)
04622 RIG-I-like receptor signaling pathway
117740351 (traf2b)
09152 Endocrine system
04920 Adipocytokine signaling pathway
117740351 (traf2b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117740351 (traf2b)
09171 Infectious disease: bacterial
05132 Salmonella infection
117740351 (traf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117740351 (traf2b)
04121 Ubiquitin system [BR:
clum04121
]
117740351 (traf2b)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117740351 (traf2b)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117740351 (traf2b)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117740351 (traf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
zf-C3HC4_4
zf-RING_5
zf-C3HC4_2
Sina_ZnF
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
117740351
NCBI-ProteinID:
XP_034402592
Ensembl:
ENSCLMG00005012808
LinkDB
All DBs
Position
12:complement(8903507..8915717)
Genome browser
AA seq
520 aa
AA seq
DB search
MARISLDCPNSLPGIPLSVLSVPMENKYKCQQCLQVLRKPVQAQCGHRFCVHCFKQLTSC
GPKPCEACRQEEIYEEPFSILNSNEAFPDNAAGREIASLPARCLNQGCDWTGSIKEYEAQ
HEDRCEFERIQCEACETSILRTEKDRHNERECEARTLNCKYCKTSFNFKEIKAHDEICLK
FPLQCKDCGKKKIPREKFTDHSKLCAKSKSACPFSDVGCKYVIENGKLGDHEHSSTMEHL
RLLLPMVLSMSRTHADASGQGEWQEDSGLGLYRAPEEGVAMVTGAAASMQSVDVEKKVNA
LENIVCVLNREVERNSVTLEAFSHQHRLDQEKIENLSNKXRQLERTVSMRDLQLSETEQL
LRELQFCTYDGIFVWKVSDFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLYLNGDGT
GRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVTSTSFQRPIS
EMNIASGCPLFCPLAKLAGKSPYLRDDTIFIKAIVDLTGL
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaatctcgttggactgccccaactctttaccagggatccccctcagtgtgctg
tcagtgcccatggagaataagtacaaatgtcagcagtgtctccaggtcctgaggaagcct
gtccaggctcagtgcggccaccgcttctgtgtacactgcttcaagcagctcaccagttgt
gggccaaagccttgtgaagcctgccgccaagaggagatatatgaggaacctttttccatt
ctcaatagtaatgaggcatttccagacaatgcagctggtcgagaaatagcaagtctgcct
gccaggtgtttgaaccagggctgtgattggacaggctcaataaaagagtatgaggctcag
catgaagaccgctgtgaatttgaaaggatacagtgcgaggcctgcgaaacctcaatcctt
cgtacggagaaggaccgacataacgagagagaatgtgaagcacgaacactcaactgtaaa
tactgcaaaacgagctttaactttaaagaaatcaaggcccatgatgagatctgtttaaag
tttcccttacaatgcaaggactgtggcaagaagaagatcccaagagaaaagttcactgac
cacagcaaattatgtgccaagtcaaagagtgcctgtccattcagtgatgtgggctgtaaa
tatgtgatagagaacgggaagctcggcgaccatgagcacagcagcaccatggagcacttg
cgtctgctgctgcccatggtgctgtccatgtcccggacgcatgccgatgcttctggtcaa
ggggagtggcaggaggactctggtctgggtctgtacagggctcctgaggagggagtcgct
atggtcaccggagctgcagcctccatgcagtctgtggatgtggaaaaaaaggtcaacgct
ttagaaaacattgtttgtgtcttgaaccgagaggtggaacgcaactccgttacgttggag
gctttctcccatcagcatcgattagaccaggaaaagattgaaaacctctccaataagntg
cgtcagctagagcggacggtctccatgagagacttgcagctgtctgaaactgaacagctg
ttaagagaactccagttctgcacctacgacgggatatttgtgtggaaagtctccgacttc
tctcgccgcagacaggatgctgtggccggtcgaacacctgcaatgttctcaccagcgttt
tactccagcaaatacggctacaagatgtgtctgaggctttatttgaacggcgacgggacg
ggtcggggaacacacctctcgctgttcttcgtcgtcatgaggggaaagtgtgacgctctg
ctcaaatggccgttcagccagaaggtgactctcatgctcttggatcaaaacaacagggag
cacattatcgatgcgttccgccctgatgtcacctccacctcctttcagcggccaatcagt
gagatgaacatagccagcggctgcccgctcttctgtccgctggctaaactggcgggcaag
agcccctatctgagagatgatacgatcttcatcaaagctattgtagacctcacaggcttg
taa
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integrated database retrieval system
