Cyclopterus lumpus (lumpfish): 117740886
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Entry
117740886 CDS
T09199
Name
(RefSeq) TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04137
Mitophagy - animal
clum04141
Protein processing in endoplasmic reticulum
clum04210
Apoptosis
clum04217
Necroptosis
clum04621
NOD-like receptor signaling pathway
clum04622
RIG-I-like receptor signaling pathway
clum04920
Adipocytokine signaling pathway
clum05132
Salmonella infection
clum05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117740886
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117740886
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117740886
09143 Cell growth and death
04210 Apoptosis
117740886
04217 Necroptosis
117740886
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117740886
04622 RIG-I-like receptor signaling pathway
117740886
09152 Endocrine system
04920 Adipocytokine signaling pathway
117740886
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117740886
09171 Infectious disease: bacterial
05132 Salmonella infection
117740886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117740886
04121 Ubiquitin system [BR:
clum04121
]
117740886
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117740886
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117740886
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117740886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-C3HC4_4
ATG16
Motif
Other DBs
NCBI-GeneID:
117740886
NCBI-ProteinID:
XP_034403427
Ensembl:
ENSCLMG00005010822
LinkDB
All DBs
Position
12:4879758..4888291
Genome browser
AA seq
595 aa
AA seq
DB search
MATQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHRFCSYCFNR
TVSNGPQKCSACIKEDIFEDPTSILKQGCAFPDNAVRREVENLSAVCINENCTWKGSIKE
YELTHEGKCEFMIIPCPSCKERIRFNEQERHSERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKEKIHDHERAFA
YEHLNLLLHYIMGMKVSMEGLQPQGLEVAGHKLLELQQSLRELEARVSQLSTTSSGPPVQ
GASAVASSSSSSSSGPPGPTASAPLPSAPVLSVSTSFTPLPSSVGAALELQLHSEKTKVA
ELGRRCTELEVKSVTFENVVCVLNREVERFATTMEAGNRQHKLDQDKIEALSNKVRQLER
TVGLKDLTVAEMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAPAMFSPAFYTSKY
GYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSNREHIIDA
FRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIVDLTGL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcaggagccgtcccctccctcgtccatggagagcaacaagcccggcttcccc
aagaagatcctgggcaacaagctggaggacaagcacctgtgcaactgctgccacaacatc
ctcagacggccgtttcaggcgcagtgtggacaccgcttctgttcctactgcttcaacagg
actgtgagtaatggacctcagaaatgcagcgcctgcattaaagaggatatttttgaggat
ccaacatcgattttgaaacaaggatgtgcttttccggacaacgccgtgcgacgggaagtc
gaaaacctctcggccgtttgtatcaatgaaaattgcacctggaagggcagcattaaagag
tacgagctgacccacgaggggaagtgtgagttcatgatcatcccctgcccgtcctgcaaa
gaacggattcgcttcaacgaacaggagcgccacagcgagcgagagtgcccggagaggacg
ctcaactgcaagtactgcaaggagccgttccacttcaaaaacatcaaggcgcacgatgag
atctgtcccaagtacccgatgatctgtgaaggctgtgccaagaagaaaatacccagagaa
aaatacgtggaccatatcaagttctgcagcaaattcagaactccgtgtcgatttcacgtc
gtgggatgtgatatgtctgtggaaaaggaaaagattcacgaccacgagcgcgccttcgcc
tacgagcacctcaatctgttgctgcactacattatgggcatgaaagtgagcatggagggc
ctgcagccccagggactggaagtcgccggccacaaactgctggagctccagcagtccctc
agggagctcgaggccagagtctcccagcttagcaccacctcctctgggcctcccgtgcag
ggagcctccgccgtcgcctcctcctcctcatcctccagctccggtccgcctggtccgacc
gcctcggctcccctcccgtcggctcccgttctgtccgtgtccacctccttcacgcctctg
cccagctcggtgggcgcggcgctggagctccagctccacagcgagaagaccaaagtggcg
gagctgggtcgcaggtgcacggagctcgaggtgaagtccgtcacgttcgagaacgtggtg
tgcgtcctgaaccgagaggtggagaggttcgccaccaccatggaagccggcaaccggcag
cacaaactggatcaggacaagatcgaggctctgagcaacaaggtgcgacagctggagcgc
acggtggggctcaaggacctcacggtcgccgagatggagggccggctgagggaaatgtcc
gccacaacctttgacggcgtcttcgtctggaggatctccgatttcgccaaaaagagacag
gacgccatcgcgggtcgagccccggccatgttttcaccagccttctacaccagtaagtac
ggctacaagatgtgtctgcggatctacctgaacggagacgggaccgggcgcggcagccac
ttgtccttgttctttgtggtgatgagggggctgagtgacgctctgctcaagtggcctttc
aaccagaaggtgaccctgatgctgctggaccagagcaacagggagcacatcatcgacgcc
tttcgacccgacgtcacttcctcctccttccagcggccggtgagcgagatgaacatcgcc
agcggctgcccgctcttctgcccgctctccaagctcgacgccaagaactcgtacatccgc
gacgacaccatcttcatcaaggccatcgtggacctcaccggcctctag
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integrated database retrieval system