KEGG   Cyclopterus lumpus (lumpfish): 117740886
Entry
117740886         CDS       T09199                                 
Name
(RefSeq) TNF receptor-associated factor 2-like
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04010  MAPK signaling pathway
clum04137  Mitophagy - animal
clum04141  Protein processing in endoplasmic reticulum
clum04210  Apoptosis
clum04217  Necroptosis
clum04621  NOD-like receptor signaling pathway
clum04622  RIG-I-like receptor signaling pathway
clum04920  Adipocytokine signaling pathway
clum05132  Salmonella infection
clum05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117740886
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    117740886
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    117740886
  09143 Cell growth and death
   04210 Apoptosis
    117740886
   04217 Necroptosis
    117740886
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    117740886
   04622 RIG-I-like receptor signaling pathway
    117740886
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    117740886
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117740886
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117740886
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clum03019]
    117740886
   04121 Ubiquitin system [BR:clum04121]
    117740886
Enzymes [BR:clum01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117740886
Messenger RNA biogenesis [BR:clum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     117740886
Ubiquitin system [BR:clum04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    117740886
SSDB
Motif
Pfam: TRAF-mep_MATH TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_2 zf-RING_6 zf-C3HC4_4 ATG16
Other DBs
NCBI-GeneID: 117740886
NCBI-ProteinID: XP_034403427
Ensembl: ENSCLMG00005010822
LinkDB
Position
12:4879758..4888291
AA seq 595 aa
MATQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHRFCSYCFNR
TVSNGPQKCSACIKEDIFEDPTSILKQGCAFPDNAVRREVENLSAVCINENCTWKGSIKE
YELTHEGKCEFMIIPCPSCKERIRFNEQERHSERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKEKIHDHERAFA
YEHLNLLLHYIMGMKVSMEGLQPQGLEVAGHKLLELQQSLRELEARVSQLSTTSSGPPVQ
GASAVASSSSSSSSGPPGPTASAPLPSAPVLSVSTSFTPLPSSVGAALELQLHSEKTKVA
ELGRRCTELEVKSVTFENVVCVLNREVERFATTMEAGNRQHKLDQDKIEALSNKVRQLER
TVGLKDLTVAEMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAPAMFSPAFYTSKY
GYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSNREHIIDA
FRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIVDLTGL
NT seq 1788 nt   +upstreamnt  +downstreamnt
atggccacgcaggagccgtcccctccctcgtccatggagagcaacaagcccggcttcccc
aagaagatcctgggcaacaagctggaggacaagcacctgtgcaactgctgccacaacatc
ctcagacggccgtttcaggcgcagtgtggacaccgcttctgttcctactgcttcaacagg
actgtgagtaatggacctcagaaatgcagcgcctgcattaaagaggatatttttgaggat
ccaacatcgattttgaaacaaggatgtgcttttccggacaacgccgtgcgacgggaagtc
gaaaacctctcggccgtttgtatcaatgaaaattgcacctggaagggcagcattaaagag
tacgagctgacccacgaggggaagtgtgagttcatgatcatcccctgcccgtcctgcaaa
gaacggattcgcttcaacgaacaggagcgccacagcgagcgagagtgcccggagaggacg
ctcaactgcaagtactgcaaggagccgttccacttcaaaaacatcaaggcgcacgatgag
atctgtcccaagtacccgatgatctgtgaaggctgtgccaagaagaaaatacccagagaa
aaatacgtggaccatatcaagttctgcagcaaattcagaactccgtgtcgatttcacgtc
gtgggatgtgatatgtctgtggaaaaggaaaagattcacgaccacgagcgcgccttcgcc
tacgagcacctcaatctgttgctgcactacattatgggcatgaaagtgagcatggagggc
ctgcagccccagggactggaagtcgccggccacaaactgctggagctccagcagtccctc
agggagctcgaggccagagtctcccagcttagcaccacctcctctgggcctcccgtgcag
ggagcctccgccgtcgcctcctcctcctcatcctccagctccggtccgcctggtccgacc
gcctcggctcccctcccgtcggctcccgttctgtccgtgtccacctccttcacgcctctg
cccagctcggtgggcgcggcgctggagctccagctccacagcgagaagaccaaagtggcg
gagctgggtcgcaggtgcacggagctcgaggtgaagtccgtcacgttcgagaacgtggtg
tgcgtcctgaaccgagaggtggagaggttcgccaccaccatggaagccggcaaccggcag
cacaaactggatcaggacaagatcgaggctctgagcaacaaggtgcgacagctggagcgc
acggtggggctcaaggacctcacggtcgccgagatggagggccggctgagggaaatgtcc
gccacaacctttgacggcgtcttcgtctggaggatctccgatttcgccaaaaagagacag
gacgccatcgcgggtcgagccccggccatgttttcaccagccttctacaccagtaagtac
ggctacaagatgtgtctgcggatctacctgaacggagacgggaccgggcgcggcagccac
ttgtccttgttctttgtggtgatgagggggctgagtgacgctctgctcaagtggcctttc
aaccagaaggtgaccctgatgctgctggaccagagcaacagggagcacatcatcgacgcc
tttcgacccgacgtcacttcctcctccttccagcggccggtgagcgagatgaacatcgcc
agcggctgcccgctcttctgcccgctctccaagctcgacgccaagaactcgtacatccgc
gacgacaccatcttcatcaaggccatcgtggacctcaccggcctctag

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