KEGG   Cyclopterus lumpus (lumpfish): 117745461
Entry
117745461         CDS       T09199                                 
Symbol
cd4-1
Name
(RefSeq) CD4-1 molecule isoform X1
  KO
K06454  T-cell surface glycoprotein CD4
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03250  Viral life cycle - HIV-1
clum03260  Virion - Human immunodeficiency virus
clum04060  Cytokine-cytokine receptor interaction
clum04514  Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    117745461 (cd4-1)
   03260 Virion - Human immunodeficiency virus
    117745461 (cd4-1)
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    117745461 (cd4-1)
   04514 Cell adhesion molecules
    117745461 (cd4-1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:clum04090]
    117745461 (cd4-1)
CD molecules [BR:clum04090]
 Proteins
  117745461 (cd4-1)
SSDB
Motif
Pfam: Ig_3 ig Ig_2 I-set V-set C2-set Orf78 DUF6249 RIFIN DUF6377
Other DBs
NCBI-GeneID: 117745461
NCBI-ProteinID: XP_034409717
Ensembl: ENSCLMG00005006569
LinkDB
Position
16:12585829..12600116
AA seq 470 aa
MRNVIRSVVLLLAALMSNAGAAEMIYARVGETVTLQPPGGINLQASYIYWKRNREDGPEL
AWRNTFGGKWTAPDEPWKDRLSLSGDALIIKDIQQTDFGTFVFKLDVGGGVISFTPYKLL
KLTVSVNPPSPLLPGDSLSLSCYTQTLEGYEDPEIQWLHPSGMKMTESRGPLTVKATGQD
NGQWTCVVTNDKKVTTAKVSVTVLDLSPAPLQPQYTSESWPLTVPCSLLAHISWEQIKAK
DIQEVHWYFVPEPSLSPQRLFSLSLDDPLTWEADQDRGLCPGPHPKKGNLSLTRNLGREE
DKGDYVCTLEFKNGATLNRTVHVKVLQIISSPGTELISGQQLNLTCSLGHPLTSDLQLKW
FPPGRSSLSSLTSDRHPARLTIPEVGPGVGGKWRCELWQSDVRLTSAEITLKIEPRMSLW
MLVVICSVTVIVILLLILVFILYRRRQKMIHLRRRLCQCKTPKPKGFYRT
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgaggaatgtaattcgctcagtcgtcctcctcctggctgcgctcatgtcaaacgcaggg
gcagcggagatgatatatgctcgagtgggagaaacggtgacccttcagcctccggggggt
attaatttacaagcttcttatatctactggaaacgtaatagagaggatggccctgaactt
gcctggcgcaatacctttggtggaaagtggaccgctccagatgaaccctggaaagaccgt
ctgtccttgtctggcgacgcactgatcatcaaagacatccaacaaacagactttgggact
tttgtctttaaactcgatgttggtggtggtgtcatttccttcactccgtataaacttctc
aaactcaccgtcagtgttaacccaccctcccctctgttgccgggggactcgctgtctttg
tcctgctacacacagactcttgagggttacgaggacccagagatacagtggctgcatccc
tcgggaatgaaaatgacagaaagtcgaggacccctcactgtgaaagccacaggccaagac
aacggccagtggacttgtgttgtgacaaacgataagaaagtgaccacggccaaagtctct
gttacggttttggacctctccccggcccctttgcagccccaatacacgtctgaatcctgg
cctctcaccgtcccctgttcccttcttgctcacatctcctgggaacaaatcaaagcgaag
gacatccaagaggttcactggtactttgtccctgaaccatctttgagtccacagaggctc
ttctccctctctctggacgacccgctgacctgggaggcagaccaagacagaggactgtgc
cccggaccacaccctaaaaaaggaaatctgtctttgactagaaatctggggagggaagaa
gacaaaggagattatgtgtgcaccctagaatttaaaaatggtgcgaccctgaacaggact
gtccacgttaaggtgctgcagatcatctcctctccgggaacagagttaatttctggccag
cagctcaacttgacttgcagcctcggccacccgctgacctccgacctacaactgaaatgg
tttccgcctggacggtcgtccctgtcgtctctgacatctgaccgtcaccccgcccgtctc
accatcccggaagtggggccaggagttggcggaaagtggagatgtgagctgtggcagagc
gatgtgcggctgacgtcggctgagataacgctgaagatcgaacccagaatgagtttgtgg
atgctggtggtcatctgtagtgtcacagtcatcgtgatcctcctgctcatcctggtattc
atcctctaccgacgcagacaaaagatgatacacctcaggcgtcgactctgccaatgcaaa
acccccaaacccaaaggattttacagaacataa

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