Cyclopterus lumpus (lumpfish): 117746876
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Entry
117746876 CDS
T09199
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1-like isoform X1
KO
K20894
shank-associated RH domain-interacting protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04217
Necroptosis
clum04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
117746876
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117746876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117746876
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LUBAC complex
117746876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
117746876
NCBI-ProteinID:
XP_034412097
Ensembl:
ENSCLMG00005022525
LinkDB
All DBs
Position
17:19393077..19400259
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AA seq
461 aa
AA seq
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MALSSGGWAPPAPVPASSQQAACGGPALTSCCSTVLMSVRVSVCHSGIRPLCLPGAGSEA
LRLQLSMDPSRAGEFRLALRDTSGNRSVFIAEFDLRSVQYEVKSPRCHEMRLAAPPHDCI
RFNFRCDREAEEWATVVMSSLREAHRVANINTCESEARLNDAAATEQRSSASLPLTEELC
LELARAIEAGDARAASQHASALARQKAALTVQLSEKNYAEGAIGLSVVVEDVSSSCCVTV
KVFPFMTVAALKQQVFLEYGFHPRVQRWVIGQCLCTEPRSLASYGVQKDGDTAYLYLISA
RQARVTRQLFQQDLESALLAPPLPSGNGPTSQDWRGYSTLPSRLAHNNQGSTGGGSDRPA
DLKDVLDIENLQLNDHTNKASKAQQTEWACPSCTFINKPSRPGCEICATARPDAHIQQVP
HRRSPPTPFRPAPCDMFPLLTPSHVLSQRREGGERIEESPV
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcactcagctccggcggctgggctcccccagccccggtgcctgcctcgtcccaacag
gctgcgtgcggcggtcccgcgctgacgtcgtgctgcagcaccgttttaatgtcggtccgg
gtctcggtgtgccactccgggatccggcccctgtgcctccccggagcgggcagcgaggct
ctgcgcctccagctcagcatggacccgagccgggccggagagttccgactggcgctgcga
gacacgagcggaaaccgcagtgtgttcatcgcagagtttgaccttcgctcggtgcagtac
gaggtcaaatctcctcgctgccacgagatgcgtctcgccgcgccgccccacgactgcatc
cgcttcaacttccgctgcgaccgcgaagccgaggagtgggccacggtggtgatgtcctcc
ctgagggaggcacacagagttgcaaacatcaacacgtgtgaatcagaagccagactcaac
gacgcggcggccacggagcagcggagctcggcctcgctgccgctcaccgaggagctctgc
ttggagctcgccagggcgattgaagccggtgacgctcgggccgcctcgcagcacgcgtcc
gctctggctcggcagaaagcggcgctgacggtgcagctgtccgaaaagaactacgcggag
ggagccatcggtttatccgtggtcgtggaggacgtgtcgtcgtcttgttgcgtcaccgtg
aaagtctttcctttcatgaccgtggccgccctcaagcaacaggtgttcctcgagtacggt
ttccatcctcgcgtgcagcgctgggtgatcggtcagtgcttgtgcaccgagccgaggtcg
ctggcctcctacggggtgcagaaggacggcgacacggcgtacctctacctgatctccgcc
cggcaggcccgcgtcacccgccagctgttccagcaggacctggagagcgccctcctcgcc
ccgcctctcccttcgggcaacggccccacctcccaggactggaggggttacagcaccctg
ccctccaggctggcccacaacaaccaggggagcacagggggaggaagcgaccgaccggct
gatttaaaagatgtcctcgacattgagaatctgcagctgaatgatcataccaataaagcc
agtaaagcacagcagactgagtgggcgtgtccctcatgcactttcatcaacaagccgtcc
cgtccaggctgcgaaatctgtgccacggccagaccggacgcgcacatccagcaggtaccg
catcgccgctcgcctccaacacctttccgtcccgctccctgtgacatgttccctttgtta
acgccgtctcatgttctctcacaaaggagagagggaggcgagaggatcgaggagagtccg
gtttaa
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integrated database retrieval system
