KEGG   Cyclopterus lumpus (lumpfish): 117747619
Entry
117747619         CDS       T09199                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, A-U alpha chain-like
  KO
K06752  MHC class II antigen
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04145  Phagosome
clum04514  Cell adhesion molecules
clum04672  Intestinal immune network for IgA production
clum05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:clum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    117747619
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    117747619
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    117747619
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117747619
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117747619
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   117747619
  Exosomal proteins of epithelial cells
   117747619
  Exosomal proteins of breast milk
   117747619
SSDB
Motif
Pfam: MHC_II_alpha C1-set Ig_3 I-set DUF779
Other DBs
NCBI-GeneID: 117747619
NCBI-ProteinID: XP_034412879
Ensembl: ENSCLMG00005017615
UniProt: A0A8C3A5U6
LinkDB
Position
18:185948..192635
AA seq 239 aa
MKMMVVMKMVVVLILSGVLCDSTEVFHEDISLVGCSDSDGENMYGLDGEEVWFADFKHKT
GVDPQPSFIDHITYPEGYDVAVTNLVICRRNLEIARKAFKDFPLERDPPSSPMIYPRDQV
EPGQKNILICHVTGFFPAPVTFSWTKNQENVTEGTSNNVPFINKDGTYNQFSRLEFSSHL
GDIYGCTVKHLDLEQTRFWDVEKTQPSVGPAVFCGVGLTVGLLGVAAGTFFLIKGNECS
NT seq 720 nt   +upstreamnt  +downstreamnt
atgaagatgatggtggtgatgaagatggtggtggtcctcatcctctccggtgtcctctgt
gactcaactgaagttttccatgaggacattagtctcgtgggatgttcagactctgatgga
gagaatatgtatggtctggatggtgaagaggtttggttcgcagacttcaaacacaagaca
ggagtcgaccctcagcccagttttatagatcacattacctacccagaaggttatgacgtt
gctgtgactaatttggtgatctgcagaaggaacctggaaattgcacgtaaagccttcaag
gacttcccactggagcgagatcctccttccagtcccatgatctaccccagagaccaggtg
gaaccaggacagaagaacatcctcatctgtcatgtgactggtttctttcctgctccagtg
acgttctcctggacgaagaaccaggagaacgtcactgaaggaaccagcaacaatgttccc
ttcatcaacaaagatggaacctacaaccagttctccagactggagttcagctcacatctg
ggagacatctacggctgtacggtgaagcacttggacctggagcagacccggttctgggat
gtggagaagactcagcccagcgttggaccggcggtcttctgtggagtgggtctgactgtc
ggtcttctcggtgtcgctgctggaacgttcttcctcatcaaaggaaacgagtgcagctga

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