Cyclopterus lumpus (lumpfish): 117748122
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Entry
117748122 CDS
T09199
Symbol
trpc5a
Name
(RefSeq) short transient receptor potential channel 5a
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clum01009
]
117748122 (trpc5a)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117748122 (trpc5a)
Protein phosphatases and associated proteins [BR:
clum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117748122 (trpc5a)
Ion channels [BR:
clum04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117748122 (trpc5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
117748122
NCBI-ProteinID:
XP_034413644
Ensembl:
ENSCLMG00005011470
LinkDB
All DBs
Position
18:complement(4268360..4317200)
Genome browser
AA seq
1078 aa
AA seq
DB search
MNPMTQLYYKKATYSPYRDRIPLQIVRAEVELSAEERAYLTAVEKGDYAGVKHALREAEV
YYNMDVNCLDPLGRSALLIAIENENLEIMELLLDHGIHTGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDSQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKRFAKDLLDQARSSRELETILNHRDNDQSEELDPRQCHDLAKLKLAIKY
HQKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFIIGLLFPFFSLIYLLAPKSTL
GRFVKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTLVEWMILPWVLGFIW
AEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTL
IAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETKASEEPNNCKGIRCERQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGT
LPPPFNIIPSPKSILYLLVWLHNKLRRRGQLPGEDTHKCENLREFTERHADSLIQNQHYQ
EVIRSLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRRPPRRHYSSS
SEAARDDGGMASEDDSESGDGAGGQRSKGVTFMNPLLDDDDRPTLGVSALVRSISGMTRV
EGGGEGEEEEDELEEGIVWGEEEEEEEGKPKSNGLKTTVIPPSSIDVLASPSSSFSSTFH
SSFARTRSRLQRLSSPGSKTDSFKRLSYLFSRSKRRAPPTPLQSPPSYTISDGLLRPLGS
HSHSDFGLSGVTRSETHLNEVGRSVDIGNPSFSPRRTNGRDSLLTLPLPPPCPCQSLHCA
SNMSESSSRLLDSSEDVFQGGGVGGAGEGGVDGGGRLMIGGWVGPCDDVIEDSVTTQL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccatgacgcagttgtactacaagaaggcgacatactcgccgtaccgcgaccgc
atcccgcttcagatcgtgcgggcggaggtggagctgtctgcagaggagagggcctacctc
accgctgtggagaaaggtgactatgcgggggtcaagcacgccctccgcgaggcggaggtg
tactacaacatggacgtgaactgcctggaccctctgggccgcagcgcgctcctcatcgcc
atcgagaacgagaacctggagatcatggagctgctgctggaccacggcatccacaccggc
gacgccctgctgtacgccatcaggaaggaggtggtgggcgccgtggagctgctgctgtcg
cacaggaggcccagcggagagaaacaggttccctcgctgatgatggacagtcagttttca
gagttcacccccgacataactcccatcatgctcgctgctcacaccaacaactacgagatc
atcaagctgctcgtccagcggaaggtcaccattcccagacctcaccagatacgatgcgac
tgcgtcgaatgcgtctccagttcagaggtcgacagtcttcggcattcaaggtctcgactg
aacatctacaaggcgctggcctcgccctccctcatcgcgctgtccagtgaggaccccatc
ctcacggccttcaggctgggctgggaactcaaagagctcagcaaggtggagaacgagttc
cgtcaggagtatgaggagctgtcgcagcagtgcaagcggttcgccaaagaccttctggac
caggccaggagttcccgagagctggaaaccatcctgaaccaccgggacaacgaccagagc
gaggagctggacccgaggcagtgccacgacctggccaagctcaagctggccatcaaatac
caccagaaagagttcgtggctcagcctaactgccagcagcttctggccaccttgtggtac
gacggcttcccgggctggaggagacgacactgggccgtcaagctggtcacctgcttcatc
atcggactcctgtttcccttcttctcactgatctacctgctggctcccaagagcaccctg
ggccgcttcgtgaagaagcccttcatcaagttcatctgccacacggcgtcctacctgacc
ttcctcttcctcctgctgctggcctcgcagcacatcgcccgcaccaacctgcacatgcag
ggacccccacccaccctggtggagtggatgatcctcccctgggtgctggggttcatctgg
gcagagattaaggagatgtgggacgggggattcacagagtacatccacgactggtggaac
ctgatggacttcgccatgaactccctctacctggccaccatatcgctgaagatagtggcc
tatgtcaagtacaactcctctcgtcccagggaggagtgggagatgtggcaccccaccctg
atcgccgaggccctgttcgccatcgccaacatcttcagctcgctcagactcatctccctc
ttcaccgccaactcccacctcgggcccctgcagatctcgctggggaggatgctgctggac
atcctcaagttcctcttcatctactgtctggtcctgctggcgttcgccaacggcctgaac
cagctgtacttctactacgagaccaaggcctcagaagaacccaacaactgcaagggcatc
cgctgcgagaggcagaacaacgccttctccacgttgttcgagaccctccagtctctgttc
tggtccatattcgggctgctgaacctctacgtcaccaacgtgaaggcgcggcacgagttc
accgagttcgtcggggcgaccatgttcgggacgtacaacgtcatctcgctggtggtgctg
ctcaacatgctcatcgccatgatgaacaactcctaccagctgatcgctgaccacgccgac
atcgagtggaagttcgcccgcaccaagctgtggatgagctacttcgacgagggcggcacg
ctgccgcctcccttcaacatcatccccagccccaagtccatcctgtacctgctggtgtgg
ctccacaacaagctgcgcaggaggggccagctgcccggggaggacacgcacaagtgtgaa
aacctccgagagttcacggagcgccacgctgacagtctgatccagaaccagcattaccag
gaagtgatccggagcctggtgaagaggtacgtggcggccatgatacgcagcgccaagacg
gacgagggactgacggaggagaactttaaggagttgaagcaggacatctccagtttccgc
tacgaggtcctggatctcctcggtaaccggcgtcccccccggcgacactactcctcctcc
agtgaggcggcgagagacgacggcggcatggcctcggaggacgacagcgagtcgggcgac
ggcgccgggggccagaggtcgaagggcgtgacgttcatgaacccgctgctggacgacgac
gacaggccgacactcggcgtgtccgccttggtgcgctccatctctgggatgacccgggtg
gaaggaggcggagagggggaggaggaggaggacgaactggaggagggcatagtatggggg
gaggaggaggaggaagaggaggggaaaccaaagagcaacgggctgaagacgaccgtcatc
cctccgtcctccatcgacgtcctcgcgtccccgtcttcatcgttctcctcgacgttccac
tcctcgttcgcgcgcacgaggagccgactgcagcgcctctcgagtccggggtcgaagacg
gactctttcaagcgcctctcctacctgttctcgcgctcaaaacgccgagctccgcccacg
cccctccagtccccgccctcttacaccatctccgacgggctgctccgccccctggggagc
cacagccactccgacttcggactcagcggcgtgaccaggagcgagacccacctgaacgag
gtgggccgctcagtcgacatcggtaacccctccttctccccgcggaggacgaacgggcgg
gactcgctcctcacgctgcccctcccacccccgtgcccctgccaatccctgcactgtgct
tccaacatgtccgagtccagctcgcgcctcctggactccagcgaggacgttttccagggc
ggaggcgtgggaggagcaggcgagggcggcgtggatggaggagggaggttgatgattggc
gggtgggtgggaccctgcgatgacgtcatagaagactccgtgaccacgcagctatag
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