Cyclopterus lumpus (lumpfish): 117748197
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Entry
117748197 CDS
T09199
Symbol
plod3
Name
(RefSeq) LOW QUALITY PROTEIN: multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3
KO
K13646
lysyl hydroxylase/galactosyltransferase/glucosyltransferase [EC:
1.14.11.4
2.4.1.50
2.4.1.66
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum00310
Lysine degradation
clum00514
Other types of O-glycan biosynthesis
clum01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
117748197 (plod3)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
117748197 (plod3)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
clum01003
]
117748197 (plod3)
Enzymes [BR:
clum01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.4 procollagen-lysine 5-dioxygenase
117748197 (plod3)
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
117748197 (plod3)
2.4.1.66 procollagen glucosyltransferase
117748197 (plod3)
Glycosyltransferases [BR:
clum01003
]
O-Glycan biosynthesis
O-linked Gal type
117748197 (plod3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2OG-FeII_Oxy
Anp1
2OG-FeII_Oxy_3
DUF6492
Motif
Other DBs
NCBI-GeneID:
117748197
NCBI-ProteinID:
XP_034413740
Ensembl:
ENSCLMG00005005960
LinkDB
All DBs
Position
18:586211..609704
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AA seq
734 aa
AA seq
DB search
MFSCRLLGLLAVVFFQSSVLADQRRLSPENLLVITAATEETDGFNRFMRTAREFSYTVKV
LGLGEQWKGGDVARTVGGGQKVRWLKAELLKHYXDNKDMVVLFVDSYDVIFASGPEELLS
KFSRLGHRVVFSAEGFCWPDQRLASRYPEVHSGKRYLNSGGFIGFASDLSSMVQQWKYKD
NDDDQLFYTKIYLDKKQRAKFNMTLDHRSRIFQNLNGAVEEVVLKFERSKVRARNVAYDT
LPVIIHGNGPTKLQLNYLGNYVPSAWTFEDGCGVCDDHLLFFNDAADEEMPLVYLAVFIE
HATPFMEEFLDRLTTLNYPPAKIRLFIHNNVVYHEHHIQRFWERHRALFPDALLVGPEEN
LQENKARAMAVGACKKDPECDYYFSIDSDVALTNPDTLRILIEENKSVIAPMLSKHGKLW
SNFWGALSPEGFYSRSEDYIEIVQAKRMGLWNVPYITQAYLIKGSVLRSKLSQVSLYVEE
GMDPDMVFCRSIRDQGVFMFVSNRDEFGRLVASSNFNTSRLHPDMWQIFDNPVDWKEKYI
SENYSKIFEDEKSFVEQPCPDVYWFPAFSEKMCDHLVETMEHNGQWSGGAHKDERLAGGY
ENVPTVDIHMNQIEFEKEWLKFLKEYIAPVTEKLYPGYYPKAQAIMNFVVRYRPDEQPSL
RPHHDSSTFTINVALNSKDVDYEGGGCRFLRYDCQVESPRKGWSFMHPGRLTHYHEGLPT
TRGTRYIMVSFVDP
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgttttcctgtcggcttctcggcctgctggctgtcgtcttcttccagagctccgtgttg
gccgatcagcgccggctctctccagaaaatctgcttgtgatcaccgcggcaacggaggag
actgatggcttcaatcgcttcatgaggacggccagagagttcagctacactgtgaaggtc
ctgggtctgggggagcagtggaaggggggtgacgtggctcggaccgtgggtgggggtcag
aaggtcagatggttgaaggcggagcttctcaaacactacnncgacaacaaggacatggtt
gtcttgttcgtggacagctacgacgtgatcttcgcatccggtccggaggagctgctctcc
aagttctctcgtctgggtcaccgggtggttttctcagcggagggattctgctggcctgac
cagagactggcttccagatacccagaggtgcattctgggaaacgctacctcaactcagga
gggttcatcggcttcgcttcagatctcagttcgatggtccaacagtggaaatacaaagac
aacgatgacgaccagctgttctacaccaaaatctacctggacaagaaacagagggccaag
ttcaacatgactctcgaccatcgttcccgaatcttccaaaatctgaatggagctgttgag
gaagtcgtgctgaagtttgagagatcaaaggtcagagccaggaacgtagcctacgacaca
cttcctgtcatcatccacggcaacggccccaccaagctgcagctgaactacctgggcaac
tacgtcccctcggcctggaccttcgaggacggctgtggggtctgtgacgaccacctgctg
ttcttcaacgacgctgctgacgaggagatgccgctggtgtacctcgccgtgttcatcgag
cacgcgactcccttcatggaggagttcttggaccgactgacgacgctcaactacccaccg
gcgaagatccgcctcttcatccacaacaacgtcgtgtaccacgagcaccacatccagagg
ttctgggagcgtcacagagctctgttccccgacgctctgcttgttggaccagaggagaac
ctgcaggagaacaaagccagagccatggctgtcggggcgtgtaagaaagatccagaatgt
gattactacttcagcatcgactctgacgtggccttgacgaaccctgatacgctgaggata
ctaatcgaagaaaacaagtcagttattgctcccatgttgtccaaacacggcaagctgtgg
agtaacttctggggcgctctgagtcctgaagggttctactcccgatccgaagactacatt
gagatcgtccaagccaagaggatgggtctgtggaacgtgccatacatcactcaggcctac
ctgatcaaaggcagcgtgctgcggtccaagctgtcccaggtgagcctgtacgtggaagag
gggatggaccctgacatggttttctgcaggagcatcagagaccagggagtcttcatgttt
gtgtcgaaccgtgacgagtttggtcgtctggtggcgtcgtccaatttcaacacgtccagg
cttcacccggatatgtggcagatcttcgacaaccctgtggactggaaggagaagtacatc
agtgaaaactactccaagatatttgaggatgagaagagctttgtggagcagccctgtcca
gatgtttactggtttccagccttctcagagaagatgtgtgatcatctggtggagaccatg
gagcacaatggccagtggtctggaggagcacacaaggacgagcgtctggccggtggttat
gaaaatgtcccaactgtagatatccacatgaaccagatcgaatttgagaaggagtggctg
aaattcctcaaagagtacatcgcccctgtcactgaaaaactctatcctggctattacccc
aaggcccaggccatcatgaactttgtggtgcgttaccgtcctgacgagcagccgtctctg
cggccacatcatgactcctccaccttcaccatcaatgtcgccctgaacagtaaggatgtc
gactacgagggtggaggctgccggttcctgcgttacgactgtcaggtggagtctccgagg
aagggctggtccttcatgcatcccggccgcctgacgcactaccacgagggtctgcccacc
accagagggaccagatacatcatggtgtccttcgtagacccctaa
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