Cyclopterus lumpus (lumpfish): 117748450
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Entry
117748450 CDS
T09199
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117748450 (scn4aa)
Ion channels [BR:
clum04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117748450 (scn4aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
ATP-synt_B
SieB
Motif
Other DBs
NCBI-GeneID:
117748450
NCBI-ProteinID:
XP_034414113
Ensembl:
ENSCLMG00005012530
LinkDB
All DBs
Position
19:15969330..15983647
Genome browser
AA seq
1900 aa
AA seq
DB search
MAPLFPPRGTDAFRRFTQESLAEIERLKAESQKAAGVEGHVGEEPEAPHADLEAGKSLPM
IYGDPPAALLNTPLEDLDPFYKAQHTFIVVTKGNTIFRFNAEPACYILSPFSLVRRGAIK
ILIHSLFSLFIMITILANCVFMTMSNPPAWSKTVEYVFTGIYTVEATIKVLSRGFCFGSF
TFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQS
VKKMVDVMILTVFALAVFALIGLQLFMGNLRQKCVRWPLETNEFFNATATFNATASFNGT
AGFNDTAYSNGTFDFNGYIENADNHYHLEGSLDALLCGNSSDAGRCPEGYTCMKAGRNPN
YGYTSFDSFGWAFLALFRLMTQDYWENLFQLILRAAGKTYMIFFVLVIFLGSFYLINLIL
AVVAMAYDEQNQATQREAKEKEEEFQRLLEQLRNQEEEIGLGSQATLTSKKSLSHRTTSD
FTDDDRSLEHDEIMKDCNGRIIPRLLIRAPTMIQSASEYELGEKSICSVHSMLHLHEPGL
KRRTASALTVLTVAAMEELEDAQRPCPPAWYKFADRFLKWDCHPRWVFFKKWVLFVVMDP
FVDLGITICIVLNTLFMAMEHYPMTPEFEHLLSVGNLVFTGIFTAEMFFKLIAMDPYYYF
QVGWNIFDSIIVSLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVG
ALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCKISLDCELPRWHMYDFFHSFLIVFRIL
CGEWIETMWDCMEVAGAGMCLVVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSAGDEDGE
MNNLQISVCRLTRGIDWLKAFAARTVLRILRKEPEEPGGGPGDAENPKVEEIEMNHMDAG
QSLKSADGIGDRLVQGRPSGFIVDGEFGLNVPIAQVESDFENLGEDDEEDDDDSEISDEK
NNEENLEDEIRMLGNVQLMGALNDGDSSVCSTVDYQPPEPEPEEVEEEEPEPVEPEACFT
DECVRRWPCLTVDITQGKGKKWWNLRRACFTIVEHDWFETFIVFMILLSSGALAFEDIYL
ERRRTIKIILEYADKVFTYVFIIEMLLKWVAYGFKTYFTNAWCWLDFFIVDISLISLAAN
WMGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFS
IMGVNLFAGKFYRCINTTTEELFPMTEVNNISDCMAIKEATQEARWVNVKVNYDNVGQGY
LSLLQVSTFKGWMEIMYAAVDSREVGEQPSYEINLYMYIYFVIFIIFGSFFTLNLFIGVI
IDNFNQQKKKIGDKDLFMTEEQKKYYEAMKKLGSKKPQKPIPRPTNLIQGWVFDFISQQF
FDIFIMVLICLNMVTMMVETDNQSAEKDDFLFKVNVAFIAVFTGECMLKLFALRQYFFTN
GWNVFDFVVVILSIAGTMLSDIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFA
LMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKEAGIDDMFNFETFGGSIVCLFEITT
SAGWDGLLLPMLNKEFPDCDPDVENPGTDVRGNCGNPLMSMAFFCSYIIVSFLVVVNMYI
AIILENFNVAQEESGDALCEEDFVMFNETWEKFDVDGTQFIEYVRLSDFCDTLQQPLRVA
KPNRLSLIKMDLPLVIGDRIHCLDVLMAVTEMVLGDTVEMAAMRESIQAKFILSNPTSNS
FAPITTTVRHKEEQAAAAVVQRAYRKHLLKRCVRHAAFVHRRKTAAGGTEEGEGPPEKEG
MLARRMGVLYGSNADLAEEMEQADVETLVSRRTPNPETPNPETPSRDTGVQCDPGVQCDP
EPPEANIMVVPVEITSEVLLHAAPDPQLFPRRATLRETIV
NT seq
5703 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccctgttccctccccgaggcaccgatgcgttccgccgcttcacccaggaatcg
ctggcggagatcgagaggctcaaggcggaaagccaaaaggcagcaggcgtagagggccac
gtgggggaagagccggaggccccgcacgctgacctggaggcgggcaagagtctgcccatg
atctacggagaccctccagcggcgctgctcaacacgcccctggaggacctggaccccttc
tacaaagcacagcacacattcattgtggtcactaaaggaaacacaatcttcaggttcaac
gctgagccggcctgctacattctgagcccctttagtttggttcgacgaggagccatcaaa
attctcatacattcattatttagcctgttcatcatgattacgattctagcgaattgtgta
ttcatgacgatgagcaacccgccagcatggagtaaaaccgtggagtatgtcttcactggt
atctacaccgttgaggcgaccatcaaagtgttgtcgagaggtttctgttttggatctttt
acattccttcgagatccgtggaattggctggatttcatggtgatcagcatggcatacgtc
actgagtttgttgaccttggcaacgtgtcagccctcaggacgtttcgtgtacttcgagcc
cttaaaacaattactgtgattcctggtttgaaaaccatcgtggccgctttgatccagtcg
gtgaagaaaatggtggacgtcatgattctgaccgtcttcgccctcgccgtcttcgccctc
atcggccttcagctcttcatgggaaatctgcggcagaaatgcgtgcgatggcccctcgag
acgaacgaattttttaacgccaccgccacgttcaacgccacggcgtccttcaacggcacc
gcgggcttcaacgacacggcatattccaacggcaccttcgatttcaatgggtacattgaa
aacgcagataatcactatcatttggaaggcagcctcgatgctctactttgtggaaacagc
tctgatgctgggaggtgcccagaaggatacacatgcatgaaggctgggaggaaccccaac
tatggctacaccagttttgactcttttggctgggccttcctggccctcttcagactcatg
acccaggactactgggagaacctcttccagctgatcctgcgggcggccggtaagacgtac
atgatcttcttcgtgttggtcatctttctgggctccttctacctcatcaacctcatcctg
gccgtggtagccatggcttatgacgaacagaatcaggcaactcagcgagaggccaaagag
aaagaggaagagttccagcggctgctagagcaactcaggaaccaggaagaggaaattggt
ctcgggagccaagccactctaaccagtaagaagtcgctgagtcatcgcaccacatcagac
tttacagacgatgaccggagcctcgaacatgacgaaatcatgaaggattgtaacgggaga
atcattccccgtctgttaatcagagcgcccactatgatccagtctgcttcagaatacgaa
ctcggagagaagtcgatctgctccgtgcacagcatgctgcatctgcacgagccgggcctg
aaacgaaggactgccagtgccctgacggtgctcacggtagctgctatggaagagttggag
gatgctcagaggccgtgcccacccgcctggtacaagtttgccgacaggttcctgaagtgg
gactgccacccgcgatgggtgtttttcaaaaagtgggtgctcttcgtggtgatggacccc
tttgtcgacttgggcatcaccatctgcatcgtgctcaacaccctcttcatggccatggag
cattaccccatgacccccgagtttgaacacttgctctccgtggggaatctggttttcact
gggatcttcacggcggagatgttcttcaagctgatcgccatggacccctactactacttt
caagtcggctggaacatcttcgacagcatcatcgtctctctcagtctggtggagttgggg
ctggcgaacgtccaggggctgtctgtcctcaggtccttccgtctgctccgcgtcttcaaa
ctggcaaagtcctggcccacgctcaacatgctgatcaagatcatcggcaactcggtgggc
gctttgggaaacctgactttggtgctggccatcatcgtcttcatcttcgcagtggtcggc
atgcagctctttggcaagaactacaaggactgcgtgtgcaagatctcgttggattgcgag
ctgccgcgctggcacatgtacgacttcttccactcgttcctcatcgtcttccgcatcctg
tgcggggagtggatcgagaccatgtgggactgcatggaggtggccggagccgggatgtgc
ttggtcgtcttcatgatggtgatggtcattggaaatctggtggtgttgaacctcttcctg
gctttgctgctgagctcgttcagcggagacaacctctccgcgggcgacgaagacggggag
atgaacaacctccagatctccgtctgcaggttgacgcgaggcatcgactggttgaaggcg
ttcgccgctcgcaccgtcctgcggattctgcggaaggagcccgaggagcccggcgggggc
ccgggggacgccgagaaccccaaagtggaggaaattgaaatgaaccacatggacgccggt
cagagtctcaaatcggcggacgggataggcgatcgtttagtccaaggccggccttctgga
ttcattgtggacggagagttcggcctcaatgtgccgatcgctcaggtcgagtcagacttt
gaaaacctgggcgaggatgacgaggaggatgatgatgactcagagatatcagatgagaaa
aataacgaggaaaacttagaagatgaaattcgcatgctgggaaatgttcaactgatgggt
gctttgaatgatggggattcttcagtgtgtagcacggtggactatcagccacctgagcct
gaaccagaagaggtggaggaggaagagccggagcccgtggagccggaggcctgcttcacc
gacgagtgtgtgaggcgctggccatgtctgacggtggacatcacccaaggcaaaggcaag
aaatggtggaacctccgtcgggcttgcttcacgatcgtggagcacgactggtttgaaacc
ttcatcgtctttatgatccttctcagcagcggcgctctggcgtttgaagatatatactta
gaaagacgccgcaccatcaagatcattctggagtatgcggacaaagttttcacctacgtc
ttcatcatcgagatgctcctcaaatgggtggcgtacggcttcaagacctacttcaccaac
gcctggtgctggttggactttttcattgtagatatttccctgattagtttagccgccaac
tggatggggtactccgacctggggcccatcaagtccctcaggactctcagggccctcagg
cctcttcgggcgctgtcgagatttgaagggatgagggtggtggtgaatgctctggtcgga
gcgatcccctccatcttcaacgtgctgctggtgtgtctgatcttctggctcatcttcagc
atcatgggagtcaacctgtttgccgggaagttctaccgctgcatcaacaccaccacggag
gagcttttccccatgacggaggtcaacaacataagcgactgcatggccatcaaagaggcc
acgcaggaggcccgctgggtcaacgtcaaggtcaactacgacaacgtgggacaaggttac
ctgtcgctgcttcaagtgtcaacttttaaaggctggatggagatcatgtacgctgccgtc
gactccagagaggtcggggagcagccatcttacgagatcaacctctacatgtacatttac
ttcgtcatcttcatcatcttcggctctttcttcacgctcaacctcttcatcggtgtcatc
attgacaacttcaaccaacaaaagaaaaagatcggagataaagacctcttcatgacggag
gaacaaaaaaagtactacgaggccatgaagaaactcggctccaagaagccacagaagccg
attccacgtccaacaaacctgatccagggatgggtgtttgacttcatcagtcagcagttc
ttcgacatcttcatcatggtgctcatctgcctcaacatggtgaccatgatggtggagacg
gacaaccagagcgcggagaaggacgatttcctcttcaaagtgaacgtcgctttcatcgcc
gtcttcaccggcgagtgcatgctgaagctcttcgccctgcggcaatacttcttcaccaac
gggtggaacgtctttgactttgtcgtggtcatcttgtccatagctggtacgatgctctcg
gacataatcgagaagtactttgtgtcaccgactctgttcagagtgatccgactggccaga
ataggccggatcctgcgtctcattaaaggagcgaagggcattcggacgcttctcttcgcg
ctgatgatgtcgcttcctgctctcttcaacattggcctcctgctcttcctcattatgttc
atcttctccatattcggcatgtcgaacttcgcctacgtcaagaaggaggccggaatcgac
gacatgttcaacttcgagacgttcggcggcagcatcgtctgcttgttcgagatcacgacg
tcggcgggctgggacgggctcctgctcccgatgctgaacaaggagttcccggactgcgat
ccggacgtcgagaacccgggcacggacgtgaggggcaactgcggcaacccgctcatgagc
atggcattcttctgcagctacatcatcgtctccttcttggtggtggtcaacatgtacatc
gccatcatcttggagaacttcaacgtggcgcaggaggagagcggcgacgcgctctgcgag
gaggactttgtgatgttcaacgagacgtgggagaagttcgacgtcgacgggactcagttc
atcgagtacgtccggctctcggacttctgcgacaccttgcagcagccgttgagggtagcg
aagcccaaccggctgagtttgattaaaatggatctgccgctggtcatcggggacaggatc
cactgcctggacgtcttgatggccgtcacggagatggtcttgggagacacggtggagatg
gcggcgatgcgcgagagcattcaggccaagttcatcctgagcaaccccacctcgaactcc
tttgcgccgatcaccacgacggtgcgccacaaagaagagcaggcggccgccgccgtcgtt
cagagggcttaccgcaagcacctgctgaagcgctgcgtgcgccacgccgccttcgtgcac
cggcgtaaaacggcggcgggcgggacggaggaaggcgagggtccgccggagaaggagggc
atgctcgcgcggaggatgggggtgctctacgggagcaacgcggacctcgccgaggagatg
gagcaggcggatgtagaaactctagtgagccgacggacgccgaatcccgagacgccgaat
cccgagacaccgtcacgtgacacgggggtccaatgtgacccgggggtccaatgtgacccg
gaaccccccgaggcaaatatcatggtcgtgcctgtagagatcacgagtgaggtgttgtta
catgcggcccccgacccacaactcttcccccgacgtgcaaccctgagggagacgatcgta
taa
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