Cyclopterus lumpus (lumpfish): 117749763
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Entry
117749763 CDS
T09199
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clum03036
]
117749763 (smchd1)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117749763 (smchd1)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117749763 (smchd1)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
117749763 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
117749763
NCBI-ProteinID:
XP_034416394
Ensembl:
ENSCLMG00005020475
LinkDB
All DBs
Position
20:complement(6359445..6384544)
Genome browser
AA seq
1962 aa
AA seq
DB search
MEEGRDRRRIHVYDCRSENKQQYTRTLLETRGLDFNGFLLLLHRTFSIRPHETFVLATTD
RIVLDFDKFEELQDGRTLHMLQREDQALATATEELIKFVPHYDTLIKGGQSEYYNSEGQK
SLAYALAELIDNSLSATSKNTGMRTIEIQMVFDETLAKPTIIILDNGCGMTSKQLKNWAV
FRLSKFSRKNVTVGGKEESYVRPEPVCRSLNSDVSYFGVGGKVAVFFFGNSTRMITKSIG
SPDVHELILSKEEFERKERDNEDIYTSVIKNRRPGDSSHLKKDERCLRSLIAEEHGKESF
TAVVITGLFPEHITFLKKDFKVWTRQLAHVYHYYIHGVNGKDTSSCSSNSDHLPKIDIQI
TLCEKPPKLPCALNLREVDDDMQTLYINAAVDTFDFTASPKDGGTVEGLIRYHPFLYDKE
TYPEDPNALLDDDDGDDDGDGYDNESGAWHQTRKKGLVFDCFWNGRLIPYTKVQGFDWCS
PNKGAKELAECYNRISGVLFSNDVFEVSITKLSFMHLEDKLNKKDTFFTRTVNSQNQRGN
IQKEFTQWLKNCHEKWDKQVKFLGYTETITRTDIPTKKMQHPWATFSSIEWDGKIYKEGQ
FVKSMKTVPILYGRVVRFLLHGKYDNSVFATGGEVEVALEPKAFHDKIKTIAISKIDKNA
TDEAIKNYIDNDAAKLPELLTVDWPEGKPWPQNAARPAGTPFGPIKVEILNKKRELLSMM
PSVSQGAGKKLIVELKVVEHGPKADQEILCYSAQHSRKSGFWFNKIENLTKRGKYTLSLN
TKMHETNATAFGGRELPSYILKFTINAGCAETFVVGEVSATLHVGVPFDIPLLITDGYDH
SVPLPPDLKPVLKCRGLDMSYETVDNRGTTCTIKRVKAKGKVLNYQQSKTYALNVTLPGL
KSDTQTIKICLLPGNPHSIHVTPEDDTITVENGNPVKFNVEIQDEAGNITARPKQVICCQ
VQGFPLVATDCSVTGAGQLVTKLINLKIINGEPQNLQVKFEIPSQKKIQAAVRQLKVLPS
TRVSRMELCSSDNLVLTNNEKIDWLAGGLLDNLFYKLYDEAGREVPPTAKIASKIKVHWT
GDVNIDDLVEGKLPAVHVPTQVQPALFFEVSYQDQNLSVSFYIVPRPDEPDRLKATLLQN
TVKLGEILPGSINLELVDQYDNVTTALTSSCMNLMTVEAEGLDKSAIAFGWQESSRSVLV
TGVQFQSGPLGPRELCFTYRSFVQRVIIKVTAGVPAQLKLISGPEKPLQVLNDQGIATPF
LIQLFDEWGNPTTDQRVVVKLNSSSSRLKVTTAVTSQPVNAEGNASFTVGSVSGPKGHYR
LEFKGSFNQKPISGPTVNLTVIPDPNKPVSLLVEYSTSAVFPAGGHFPVFSVTVVSDEGS
PMTTFNPAAASMWLWKGEPSGNAPPQAVTELKCSKPMKNENNDRFHFRDKEIPELVGKYT
IQFSLQMGNGKVLFSNQIPINVVANQPVKLGPNSQLPTPVVSNSKVMANRTLVENMTLRI
MDSYGNAAGQDLEGKVVVSIKNFSGDGNKSLPLFEGGTSSLMIRLVKGAALINRLVMMEN
SPGEHGSAYILLFKPEALMVPTPLVPFELPFHFSNDAENQRKITELSRKKNELTTSITAS
REIFSTYRELLTLLTNQHLVASQKVVALRNDLINKDVNIAQTESNPDVDRFLKEKVAEAD
QILKTPRRVFSIQDPFIGQQDVLGMVGHLASVQGDDAAWVISWHIRGDMDCVITKTSAAA
QRIYDYTGGRQQVMALDSVFVHPGNRSMPHIRNDRLLFDPPGNPVHAMDLLQYPHNPENC
IIAFKNILGDTILIDDLDSAINYRKAVVQNKLPCPTILTRQGDRVSAKGKFGGAQNKALP
MNTLHVFGAPIPQHYYTLKQQIDLLTHHRSAVEMRDRAAKDREEHLKNIMSPKNLKRHEE
MEEKEKQLEEIQRQLESTPVRPVKRGLEGAGEPSSTTPKRAK
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaggaagagaccgcaggaggatccacgtttacgactgccgctccgaaaacaaa
cagcaatatacgaggacattgctggaaacaaggggtttggacttcaacggctttcttcta
cttctgcaccggacattctcaatccgtccacatgaaacatttgtgcttgcaacaacggac
cgaatcgtcctggattttgacaaatttgaggagcttcaggatggccgcaccctccacatg
ttgcaacgggaggaccaagctctggcaacggctacggaggagctcatcaagtttgtgcct
cattatgatacgttgatcaaggggggccagtccgagtactacaacagtgagggccagaaa
tcattggcgtacgcgcttgctgagctgattgacaattctctttcggccacatctaaaaac
acggggatgaggacaatagagatacagatggtgtttgatgaaactcttgcgaaacctacc
atcattatcttggataacgggtgtgggatgacctcgaaacaattaaaaaactgggcagtg
ttcagactctctaaattttccaggaaaaacgtcacagttggaggtaaagaagagagttat
gttcggcctgagccggtctgtcgtagtctcaacagtgatgtatcctactttggagttgga
ggaaaagtggctgttttcttcttcggaaactcgaccaggatgatcactaaatcaattggc
tccccagatgttcatgagctgattctgtcaaaagaggagtttgagagaaaagagagggac
aacgaagatatttacaccagtgttattaaaaacaggaggcccggcgactcttcacatctg
aaaaaagacgagcgctgcctccgttccctcatcgctgaggaacatgggaaggaaagcttc
acagccgtggtcatcacgggactcttccctgagcatatcacctttttgaaaaaagatttt
aaagtgtggaccagacagctagctcacgtatatcactattacattcatggagtcaatgga
aaagacacgagtagctgctcttcaaactctgatcatctccctaaaattgacattcagatc
actttgtgcgagaagcctcccaagttaccctgtgcgctgaatctgagggaagtggacgac
gacatgcagactctgtacataaacgctgctgtcgacacgtttgacttcacggcctcccct
aaagacggcggcacggtggagggactcattcgatatcaccccttcctctatgacaaagag
acgtacccagaagaccccaatgctctgctcgatgacgatgatggtgatgatgatggtgac
ggttacgacaatgagtctggagcctggcatcagacaagaaagaaggggctggtatttgac
tgtttctggaatggacggcttataccttacaccaaagtgcaagggtttgactggtgttct
ccgaataaaggagcaaaggagcttgcagagtgttacaaccggatttcaggagtgcttttc
agtaacgatgtcttcgaggtcagcataaccaagctcagcttcatgcacctggaggacaaa
ctgaacaagaaggacaccttcttcacacgcaccgttaattcacagaatcaaagaggaaac
attcagaaggaattcacgcagtggctgaaaaactgccatgagaagtgggacaagcaagtg
aagttcctgggctatacggagaccataacacggacggatattcccacgaagaaaatgcag
catccctgggcgacgttctcttccatcgaatgggacggcaaaatatacaaagaaggccaa
ttcgtgaagtctatgaaaacggtgcccattctgtatggtcgtgtggttcgctttttgctg
catgggaaatacgacaacagcgtctttgccacaggaggagaggttgaagtggctctggaa
cccaaagcatttcacgacaagataaagaccatagctatttccaagattgacaagaacgcc
acagatgaagccatcaagaactacattgacaatgatgccgccaagcttccagagcttcta
acggtggactggccagaagggaagccctggccacagaatgctgctcgtccagctgggact
ccgtttgggccaatcaaagtcgaaattctaaacaagaagagagagttgttatccatgatg
ccctcagtgagccagggagcagggaaaaaactgatcgttgagctcaaagtcgtcgagcac
ggtcctaaagcagaccaagagattctctgttatagcgcccaacattcaaggaagtcgggt
ttctggttcaacaaaattgaaaatctgaccaaacgggggaagtatacgctgtccctaaac
acaaagatgcacgaaactaatgcaaccgcctttggaggccgagagcttccgagctacata
ctcaagttcaccatcaacgcgggttgtgctgagacttttgttgttggggaagtgagcgcc
actcttcatgtcggagtgccattcgacattcctcttctgataacggatggttatgaccac
tcggtgccgcttcctcctgatctcaaacctgtccttaagtgcaggggcttggatatgagc
tacgagactgtggacaaccgtgggaccacgtgcaccatcaaaagggtcaaagcaaaagga
aaagttctaaattaccaacaatcaaagacgtatgccctgaacgtgaccctgcctggcctg
aagtccgacacacagacgatcaagatctgtcttcttcctggtaatccacattccatccac
gtgacgccagaagacgacacgatcacagtggaaaatggaaaccctgtcaagtttaatgtt
gaaattcaggacgaggctggaaacatcaccgctcgtcccaaacaggtcatttgctgccag
gttcaggggttcccattagtggcgaccgactgcagcgtcacaggagctggacagcttgtg
acaaagctaataaacctgaaaataatcaacggagagccacagaacctccaagttaaattt
gagattcccagtcaaaagaagatccaggcggccgtgaggcagctgaaggtgttgcccagc
acaagggtctcccgcatggagctctgcagcagcgacaatttggtgctgacgaacaacgaa
aagatagattggctggctggaggcttgctggataacctgttctataagctctatgacgag
gctggtcgagaggttcctcccactgctaaaatagcctccaagatcaaggttcactggaca
ggagatgtaaatatagacgatctggtcgaggggaagctgcccgccgtgcatgtgcccacg
caggtgcagccagcgctcttcttcgaggtgtcctaccaagaccagaacctgtccgtctcc
ttctacatagtgcctcgtccggatgaaccagatcgactcaaagcaactctcctccaaaac
acagtgaagctgggggaaatccttcctggaagcatcaacttggagcttgtggaccagtat
gataatgtgaccacggcgcttacttccagctgtatgaacctcatgaccgtggaagctgag
ggtctggacaaatcggccatcgccttcggttggcaggagagcagccgttcagttctggtg
acgggggtgcagttccagtccgggcctctcgggccccgagagttgtgcttcacctacagg
agctttgtgcagcgcgtcatcattaaagtgacggctggagtccccgcacagcttaaactc
atcagcgggccagagaagcctttgcaggtgctgaatgaccaaggcatcgccacgccgttc
ctcatccagctgtttgacgagtggggaaacccaactacagaccagagggtcgtggtgaaa
cttaactcttcatcctcgagactgaaggtgacgacagctgtcacttcacaacccgtgaat
gcagaagggaacgcctctttcactgttggtagtgtgagcggaccaaaggggcactatcgg
cttgagtttaaaggttccttcaaccagaaacccatctctggtcccacagtgaacctcact
gtcatacctgatcccaacaaacctgtcagcctgttggtggagtacagcaccagtgccgtg
ttccctgctggaggccatttcccagtcttctctgtgaccgtggtgtctgatgaaggaagc
cccatgacgacctttaaccccgccgctgcgtccatgtggctgtggaagggagagccgtca
ggaaacgcgcctccacaagcggtcactgagctgaagtgtagtaaaccaatgaagaatgaa
aataatgaccgttttcacttcagagataaagagatcccagagcttgttggaaagtacacc
atccagttttctctacaaatgggcaatggaaaagtcctgttcagtaatcagattccgata
aatgtggtggccaatcaacctgtcaaactgggacccaactcacagctaccgaccccggtt
gtttccaacagcaaggtcatggccaaccgcaccctggtggagaatatgactctgaggatc
atggattcctatggcaacgcagcggggcaggacctggaggggaaggtggtcgtttccatt
aagaacttcagcggcgacggcaacaaaagcctccctctgttcgaaggcggaaccagcagc
ttgatgatacgattggtaaaaggagcggcgctcattaataggctcgttatgatggagaac
agccccggcgagcatgggagcgcatacatcctcctcttcaaacctgaagcgttaatggtt
cccaccccactcgttccttttgagctccccttccatttttccaatgatgctgagaaccaa
cgaaaaattactgagctgtccaggaagaaaaatgagctcactacttctattactgcaagc
agagaaatcttttctacatatcgtgaactccttaccttgctgaccaatcagcacctggtc
gcaagtcaaaaagtggtcgcccttcgaaatgatctgatcaataaggatgtgaacattgcc
caaactgaaagtaacccagatgttgacagatttctaaaagaaaaggtagctgaagccgac
cagatcctgaaaacacccagaagagttttctccatccaggatcccttcatcgggcagcag
gatgttttaggaatggttggccacctggcctctgttcagggcgacgatgcagcgtgggtc
atctcctggcatatcaggggtgacatggactgtgtcatcaccaaaaccagcgcagcagcg
cagaggatctacgactacaccggaggcaggcagcaggttatggccctcgacagtgtgttt
gtgcatccgggcaacagatcgatgccacacataagaaatgaccgcctgctctttgatccc
cctggaaacccagtccacgccatggacctcctgcagtacccccacaacccagagaactgt
atcattgcttttaaaaacatcctcggagacactattctgattgatgacctggactctgcg
atcaactacaggaaggcggtggtacagaataagctgccgtgtcccaccatcctgaccagg
cagggcgaccgggtcagtgctaagggaaagttcggaggcgcccagaacaaagccctaccg
atgaacacgctacacgtgttcggagcccccatcccacaacattactacactttaaagcaa
caaatagacctgctcacccatcaccggtccgctgtggagatgagggaccgggcagcgaaa
gaccgcgaggagcacttaaagaacataatgtctcctaagaacctgaaaaggcacgaagaa
atggaggagaaggagaaacagctggaggagattcagagacaacttgagtcaaccccagta
agaccagtgaaacggggtcttgagggtgctggtgagccatccagcaccactccaaagaga
gcaaagtag
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integrated database retrieval system
