Colletotrichum lupini: CLUP02_07690
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Entry
CLUP02_07690 CDS
T08561
Name
(RefSeq) ABC transporter
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
clup
Colletotrichum lupini
Pathway
clup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUP02_07690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clup03019
]
CLUP02_07690
Messenger RNA biogenesis [BR:
clup03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CLUP02_07690
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_16
AAA_15
AAA_23
AAA_28
AAA_22
DUF3584
AAA_25
RsgA_GTPase
ORC-CDC6-like
SRP54
PduV-EutP
Arf
AAA
NACHT
AAA_30
nSTAND3
Zeta_toxin
AAA_14
AAA_13
Motif
Other DBs
NCBI-GeneID:
73341693
NCBI-ProteinID:
XP_049143826
UniProt:
A0A9Q8SS33
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Position
4:complement(1867643..1868482)
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AA seq
279 aa
AA seq
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MAQKSPTIEVTNLSYNFQDSSSGLKNISLSVPSRSRTLLIGANGAGKTTLLRLLAGKRLA
PQGGISIAGIDPFKDGLEGVTYLGLEWVLNPIVRTDIGVLELLRSVGGDAYPDRRDELVS
VLDIDTAWRMHAVSDGERRRVQLAMGLIRPWTILLLDEITVDLDVLSRAEFLAWLRRETE
IRDCTIVYATHILDNLAGWPTHLVHMHLGTVREWDTADKFIEGLDGSTGNSTLGELVLGW
LRKDLKDRGPRSQARVAPEGKTYATGGVGGYGDESDKLK
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaaaatcgcccacgatcgaggtgacaaaccttagctacaacttccaagactcg
agctccggcctcaagaatatctccctctccgtcccctcccgctcccgcaccctgctcatc
ggcgccaacggcgcaggcaagaccaccctcctccgcctcctcgccggcaagcgcctcgcc
ccgcagggcggcatctccatcgcgggcatcgaccccttcaaggacggcctcgagggcgtc
acctacctcggcctcgaatgggtcctcaaccccatcgtccgcaccgacattggcgtcctc
gagctcctgaggtcggtcggcggcgacgcctacccggaccgccgcgacgagctcgtcagt
gtcctcgacatcgacaccgcctggcgcatgcacgccgtctcggacggcgagcgccgccgc
gtccagctcgccatgggcctcatccggccctggaccatcctcctgctcgacgagatcacc
gtcgacctcgacgtcctcagccgtgccgagttcctcgcctggctgcgccgcgagacggag
atccgcgactgcactattgtctacgcgacgcacatcctcgacaacctcgccggctggccg
acgcacttggtccacatgcacctcggcaccgtccgcgagtgggacacggccgacaagttc
atcgagggcctcgacggctccacgggcaacagcaccctcggcgagctggtcctcggctgg
ctgcgcaaggatctcaaggaccgcggcccgagatcgcaggcgagggtcgcgcctgagggc
aagacgtacgcgactggcggcgttggaggctacggcgacgagtctgacaagctgaaataa
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