Columba livia (rock pigeon): 102083770 Help Entry 102083770         CDS       T02912                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism clv  Columba livia (rock pigeon) Pathway clv04010   MAPK signaling pathway clv04120   Ubiquitin mediated proteolysis clv04140   Autophagy - animal clv04144   Endocytosis clv04620   Toll-like receptor signaling pathway clv04621   NOD-like receptor signaling pathway clv04622   RIG-I-like receptor signaling pathway clv05132   Salmonella infection clv05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:clv00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     102083770 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     102083770 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     102083770 (TRAF6)    04140 Autophagy - animal     102083770 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     102083770 (TRAF6)    04621 NOD-like receptor signaling pathway     102083770 (TRAF6)    04622 RIG-I-like receptor signaling pathway     102083770 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     102083770 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     102083770 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:clv04131]     102083770 (TRAF6)    04121 Ubiquitin system [BR:clv04121]     102083770 (TRAF6) Enzymes [BR:clv01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      102083770 (TRAF6) Membrane trafficking [BR:clv04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     102083770 (TRAF6) Ubiquitin system [BR:clv04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     102083770 (TRAF6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 Sina_ZnF zf-RING_5 SlyX PspA_IM30 Med21 TRAF3_RING RING_XB3-XBAT31 zf-RING_11 HAP1_N U-box CEP104_ZnF CENP-F_leu_zip UPF0242 ATG16 DUF1664 Spc29 DUF16 PUMA_CC HMMR_N DUF2730 DM ADIP Motif Other DBs NCBI-GeneID:  102083770 NCBI-ProteinID:  XP_005500297 UniProt:  A0A172PWX2 LinkDB All DBs Position Unknown AA seq 545 aa AA seqDB search MSLLYSDNSCGAQDVESGCCAAMASACSVGAKEDSISISSGTGNPPSSFTEEPQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPIDNEILLENQLFPD NFAKREILSLMVKCPNKGCSTKMELRHLEDHELQCDFSTVECPQCQGAFQKNHLKEHMTQ ECPRRQVCCPNCATSMAYEDKELHDQTCPLANVFCEYCNTVLIREQMPNHYDNDCPTAPV PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTATNPVPFINGLPFEPAL FSHVSHTAYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRNL EGKISEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQL PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL AFQRPTIHRNPKGFGYVTFMHLQALKQRTFVKDDTLLVRCEVLTRLDLNSLRREGFQARS TDGAM NT seq 1638 nt NT seq  +upstreamnt  +downstreamnt atgagcttgctatatagtgataacagttgtggagcccaagacgtggaaagtggctgctgt gcagccatggccagtgcctgcagtgttggagcaaaagaagacagcataagcatcagcagt gggactggaaaccctccaagttctttcacagaggaaccacaaggatatgatgtggagttt gatccgcccttggaaagtaaatatgaatgtccaatctgtttgatggctcttcgggaagca gtgcagacaccgtgtggacaccgtttctgcaaaggctgcattgtcaaatcaataagagat gcaggtcacaaatgtccgatagacaatgaaattctgcttgaaaatcaactttttcctgac aactttgctaaacgggaaatactgtcattaatggttaagtgtcccaacaaaggctgcagt acgaagatggagctgaggcatttagaggaccacgagttgcagtgtgatttttccacagtg gaatgcccacagtgccaaggagccttccagaagaaccatctgaaagagcacatgacgcag gagtgtccgaggcgtcaagtctgttgtccaaactgtgccacatctatggcctatgaagat aaagagcttcatgaccaaacctgcccacttgccaatgtattttgtgaatattgcaacaca gtgctcatcagagagcagatgcctaaccattatgacaatgattgtcctactgccccggtg ccatgtttttacagtgcttttgggtgtcctgaaaagatgcaaaggaatgaactggcacga catatgcaggagttcactcaggttcatatgagaatgatggctcagagttttcaaaatatc agtgttactgctacaaatcctgtacccttcatcaatggcctaccctttgaacctgccctc ttctcacatgtgtcacacaccgcatatgattgtaatccagaagttgaaaacttcaaagaa actattcagcagttggaaggtcgtctggtaagacaagatcaccaaatcagagaactcatt gctaaaatggagactcagaacactcatatggcagaactcaaacgtacaatccgcaatttg gaggggaagattagtgaaatggaggcacagcaatgtaatggtatttatatctggaagatt gagaacttcagtggacttcagaaagcccaggaagaagagagacctgttgtgatgcacagt cctggattctacactggaaagcccggctacaagctgtgtttgcgcctgcatattcagtta ccaaatgctcagcgttgtgctaattttatatctctgtttgtccacactatgcagggagaa tatgacagccatctgccttggccttttcaaggcactatacgactttctattttggatcaa tcagaaggccctgaaaggcagaatcatgaagaagtaatggaagccaagccagaattacta gctttccagagaccaacaattcaccgcaatccaaaaggtttcggttatgtgacattcatg cacctgcaagccttgaagcaaagaaccttcgtaaaggatgatacccttctggtgcgctgt gaagttctaacgcgtctagatttaaacagtctccgcagagaaggatttcaagctcgcagt acggatggagctatgtag

DBGET integrated database retrieval system