Columba livia (rock pigeon): 102084331
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Entry
102084331 CDS
T02912
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
clv
Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clv03036
]
102084331 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
clv03400
]
102084331 (SMCHD1)
Chromosome and associated proteins [BR:
clv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102084331 (SMCHD1)
DNA repair and recombination proteins [BR:
clv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102084331 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
102084331
NCBI-ProteinID:
XP_005500025
UniProt:
A0A2I0MVZ1
LinkDB
All DBs
Position
Unknown
AA seq
1975 aa
AA seq
DB search
MEIKAFGINTDENFVITTTNRKEITEDNFSELVQDGVTLYLLQSVDQTLLSATKERIDFL
PHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSIQIKLLFDESQGKP
AVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVG
GKQAVFFVGHSARMISKPAGTQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHI
TSDDERFLHGLILEERDKESFTAVVITGVQTDHMQYLKNYFHLWTRQLAHIYHYYIHGPK
GNEANAVTKDVSPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHV
DGEGIVEGIIRYHPFLYDKETYPDDPCFPSKLGDDDDDDCFIVEKGARGKRPIFECFWNG
RLIPYTTVEDFDWCASPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDK
NTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWA
VYAAIEWDGKTYKTGQLVKTIKTLPLFYGSIEKFFLYGDHDGDIYATGGEVQIALEPQAL
YAEMKTIPISKLDRTVSEKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGA
LRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWFK
KMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKIFKFTIIEGKPEKFSVGPLELPLRV
GVPFDVPLELQDEFGHATQLTTAIKPVLEASGLTLRYEGITLGTKCIIKGVTAQGCVNSC
QGKNFNVKVTLPGLKEDTQNFKIRLQPGPPRQLKVKPDSEVLKIENGTAFPFQVEVLDES
GNITAQPKLIVHCKFIGASNLPVYSVDCSNAGTNILTGPVLHVQNIKKDQMLKAKIEIPS
CKDVPPVEKIIKLLPSSRVARLQVLSMDGQKAIQIKHQDEINWVAGGVMHHLIFQMYDEG
EREIHITPTMAEKIKVNWTPKINREQLIQGLLPDVKVPTSVKDVRYCLISYLDDHVSLES
AFTVRPLPDEPRHIKCKLNGPNTLQMGEELQGEIEVMITDQYGNQVQTMTSACLNSLGVA
GPGLDKSNLKITWQENTLTMRVKGIRFKPCSLGSKQLCLAWREFSDFLRLNLTAGSPAKL
QFVDWPELEKPVAVINGRELQKPLIVQVCDQWGNPSPEPNVKISLTKSNNLKIVPSNHQH
KTDENGRANLGVISIHAPRGEHTLQLKALYNKTALDCPIITLNVLPDPEKPIFLNVKYDK
DASFPAGSTFPDFVVSVLSEDDNIIKNINPARISMKMWEAQSSETRTVIDATTFSCSKVK
DDKEDGFFYFRDKMIPERVGTYCIQFTFAMDKTNMLSSDQIIVEVVPNDPVCLLPDYLPA
TPAVSNVRTLTSRTLVKDLRLHVMDKYNNHTGIDLVGKIIAKIKSPCEDHVIEIPQFQGK
VSTLEFPFDRGSAAINLVLAENSPGRDSTEYVLVFEPDLLGLKKPLEPYRLSFMFYNDFK
KQQQMAALTKERDQLSQSIGVYRNWLDTTNQLTTELKRQVKQAETRETHLKSELKKHQIE
LPQTNTLQYVDSVIKQKMLDQERVMKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAA
KVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSVYKKTLPDWNRPLPHLRNGK
ICFKPVGNPVFARDLLTFPDNVEHCQTVFAMLLGDTIIVDNLDAANHYRKEVVKITRCPT
LLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKLYSAFSGQIDLLQQYRAAVVK
LDNVNQELDLHLQTLNTPEMQQKKKELAEQEKSLKEIEQKLGMTPSDKVTESVLQPVMLE
LCDTPIPTKRMRREMVKKLYNSEEWISCTTKKQQQQQTLHMSPSELNGTSRKRKA
NT seq
5928 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaaggcatttggcataaatactgatgaaaactttgttatcaccacaacaaac
aggaaggaaattacggaagacaacttcagcgaacttgttcaagatggagttactttatat
ctgctacagtcagtggatcaaacactgctttcggcaaccaaggagcgaattgatttcctg
ccccactatgatacacttgttaaaagtggcatgtacgagtactatgccagcgaagggcaa
aatccattgccatttgcccttgctgagttgattgacaattctctgtcagctacatcccga
aatactggtattcggagcatacagataaaattgttatttgatgagtcccaaggaaaacca
gctgttgctgtgatcgataatggaagaggaatgacttctaaacagcttaacaactgggct
gtatatagattgtcaaagtttacaagacaaggtgacttcgagagtgatcattcaggatat
gtacgccccttgccagtgcctcgtagtttaaatagtgatatctcatattttggagttgga
ggcaaacaagcagtgttcttcgttggacactctgccagaatgataagcaaacctgcagga
actcaggatgttcatgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaac
aaagaagcaatatatagtggatacatccgaaacagaaagccgtctgactctactcacatc
acaagtgatgatgaaagatttcttcatggtctgatattagaagaaagggataaagagagt
ttcacagcagttgtcattacaggtgtacaaacagatcatatgcagtacttgaaaaactac
tttcatctttggacaaggcagctggcgcatatctatcactactatatccatggaccaaaa
ggaaatgaagctaatgctgtaacaaaagatgtaagccctttcaacaacatcgacattcag
atttcaatgtttgaaaaaggaaaagtgccaaagattgtcaatcttagggagatcaaagat
gacatgcagacattgtatataaatactgcagcagatagttttgagtttaaggcacatgtc
gatggagaaggtatagtggaaggcatcatccgatatcatcccttcctgtatgataaagaa
acataccctgatgatccatgttttccatcaaaattaggcgatgatgatgatgacgactgc
tttatagtagaaaagggtgccagagggaaaaggcctatttttgaatgtttttggaatgga
agattaataccatacacaactgtggaagattttgactggtgtgcttctccaaagaagaga
ggattggcaccaattgaatgctacaacagaatttctggtgcattatttaccaatgataaa
ttccaggtcagcacaaacaaacttactttcatggatctggagctgaaactaaaagataaa
aatactctgttcacaagaatcttcaatggacaggagcaacgaatgaaaattgacagagaa
tttgctttgtggctcaaagactgtcacgaaaaatatgataaacagataaagttcacagtc
tttaaagggataactacacgtactgatttaccatccaaaagaatgcagagcccttgggca
gtgtatgctgcaatagagtgggatgggaaaacatacaaaactggacagctggtgaaaact
attaagactcttccattattctatggaagtattgagaaattttttttgtatggagaccat
gatggggatatatatgccactggaggagaggttcaaattgccttggaacctcaggcattg
tatgctgaaatgaaaactattccgatctcaaaacttgacagaacagtgtctgagaaagct
gttaaaaaatacatagaggatgaaatggcaagacttcctgacaaattatcagtaacatgg
cctgaaggagatgagttattaccaaatgaaacaagatttgctggtacaccaataggagca
ttaagaatagaaattttgaataaaaaaggagaagcgatgcaaaaacttccaggtacaagc
cacgggggttcaaagaaacttcttgttgaactcaaggttattttacattcacctactggg
aataaagaaataatatcccatatcagtcagcatggaggcaaatggccgtactggtttaaa
aaaatggaaaatcttcagaaacttgggaactacaccttgaaactgcaagtagtattgaat
gaaagtaatgcagacacttacgcaggaaggcctctaccatctaaaatatttaaatttact
attatagagggcaaaccagagaaattttcagtgggtcctttggaacttcctcttcgagtt
ggagtaccttttgatgttcctttggaattacaggatgaatttggtcatgcaacacagttg
acaactgccattaaaccagttcttgaagctagtggattgacgttgcggtatgaaggaata
actctgggaacaaagtgcatcattaagggtgtcactgctcaaggctgtgtaaatagttgc
cagggcaagaactttaatgtgaaggttactcttcctggtttgaaagaagacacacaaaac
tttaaaataagactgcagcctgggcctcctcgtcaattgaaagtgaaaccagattctgaa
gttctaaagattgaaaatggtacagctttcccctttcaggttgaggttctggatgaatca
ggaaatataacagcacagccaaagttgatagtccattgtaagttcataggtgcttcaaac
cttcctgtgtattctgtggactgcagtaatgcaggaacgaatattttaactggtccagtt
ttacatgtgcagaatatcaagaaagaccagatgctgaaagcaaagattgaaatacctagt
tgtaaagatgtgccaccagtggaaaagatcattaaacttcttcctagcagtcgtgttgca
aggctacaggtcttaagtatggatggacaaaaagctattcaaattaaacatcaggatgaa
attaattgggttgctggcggtgtcatgcaccaccttatatttcagatgtatgatgaagga
gaaagggagatacacataactcccaccatggcagaaaagatcaaggttaactggacacct
aaaattaacagagaacagttgattcagggattattacctgatgtaaaagtaccaacatca
gtaaaagatgttcgttactgtctcattagttatcttgatgaccatgtgtctttggagagt
gcattcacagtcaggccacttcctgatgaacccagacacattaaatgtaaattaaatgga
ccaaacacactgcagatgggtgaagaactacaaggtgaaattgaggtaatgattacagat
cagtatggaaatcaggttcagaccatgacatctgcgtgtctaaattccctaggagttgct
gggcctggacttgataaatcgaatttgaaaataacttggcaggaaaatactctaacaatg
agagtaaaaggtattcggtttaaaccttgttcacttggaagcaaacaattgtgcctcgct
tggcgtgaattttctgactttctcagattaaatttaactgcaggatcgcctgctaaattg
cagtttgtggattggccagagttagaaaagcctgttgcagtgattaatggtagagaattg
cagaagccccttattgttcaggtgtgtgatcagtggggaaatccatctcctgaacctaat
gtcaaaatcagccttacaaagagtaacaacttaaagattgttccttcaaaccatcaacac
aaaacagatgaaaatggtagggctaaccttggagttattagtattcatgcacctagagga
gaacacactttacagcttaaagccttgtacaacaagactgcattagattgtcctataatc
acattgaatgtcctgcctgatcctgagaaacccattttcttgaatgttaaatatgacaaa
gatgcttcttttccagcaggaagtaccttccctgattttgtggttagtgttctttctgaa
gatgacaacattattaaaaatattaatccagcaaggatttctatgaaaatgtgggaagca
cagagcagcgaaactaggacagtgattgatgctacaacatttagctgtagtaaagtgaag
gatgacaaggaagatggcttcttctacttcagggataaaatgattccagagagagtggga
acttactgtatccagtttacctttgcaatggataagacaaatatgctcagcagtgaccag
attatagttgaagttgtacctaatgaccctgtgtgcttgttacctgattatttaccagct
actccagcagtttccaatgttcgaactcttactagccgtacactggtcaaggatttacgc
ctccatgtaatggacaaatacaacaaccacactggaattgatctagttggcaaaataata
gcaaaaattaagagcccatgtgaagatcatgttatagagatcccacagtttcaggggaaa
gtcagtacacttgagtttccatttgacagaggatcagctgcaattaatctagtgctggct
gaaaatagtcctggaagagatagcactgaatatgttcttgtatttgagccagatctgcta
ggtttgaaaaaacctttggaaccataccgtctgtcatttatgttttacaatgatttcaag
aagcagcagcagatggcagcacttacaaaggagagagaccaattatctcagtccataggt
gtttacagaaattggcttgatactactaatcagcttacaactgaattgaaacgtcaggtt
aaacaggctgaaacaagagaaactcacctgaagagtgaactgaaaaaacaccaaattgaa
ttaccacagacaaacacacttcagtatgtggattctgttataaaacaaaagatgttggat
caagaaagagtgatgaaacagccaaggcgaacttgtaccctcccaaactatccaaaaggc
aaccaggatattttaggcaagattgcacatttagctcaaattgaggataacgaagcagca
aaagttatctcttggcatttggcaagcgacatggactgtgttgtcacactcactactgaa
gctgctcgttctatttttgatgaaactcaaggtcgacaacaagtgttaccccttgattct
gtttacaagaagacacttcctgattggaacaggcctttacctcacttaagaaatggaaaa
atctgcttcaaacctgttggaaatcctgtatttgccagagatctgttaacatttccagat
aatgtagagcactgtcaaacagtgtttgcaatgctcttgggtgacactatcattgtagat
aacttggatgctgccaaccattaccgaaaagaggttgtaaaaattacacgttgccctact
ttgctgactagggaaggagacaggattcgcagcaatggaaaatttggaggccttcagaat
aaagctcctccaatggacaaactcagaggaatggtatttggagcacccattccaaaactt
tactctgctttctctggacagatagatcttcttcagcaataccgtgcggcagtggtaaaa
ctcgataatgtgaaccaggaacttgatttacatttgcagactcttaacactccagaaatg
caacagaaaaaaaaggaacttgccgaacaagagaaaagcctgaaggaaatagaacaaaaa
ttgggtatgactccatcagataaagtcactgaatctgtgcttcagcctgtaatgttagaa
ttgtgtgacacccccatccctaccaaaagaatgcgaagagaaatggtaaaaaaattgtat
aactctgaagagtggatctcctgtaccacaaagaagcagcagcagcagcaaacactgcac
atgtcgccttcagaacttaatggaacgtcacgaaaaagaaaggcatag
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