Columba livia (rock pigeon): 102087906
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Entry
102087906 CDS
T02912
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03440
Homologous recombination
clv03460
Fanconi anemia pathway
clv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102087906 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
102087906 (BRCA1)
03460 Fanconi anemia pathway
102087906 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clv01009
]
102087906 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clv04121
]
102087906 (BRCA1)
03036 Chromosome and associated proteins [BR:
clv03036
]
102087906 (BRCA1)
03400 DNA repair and recombination proteins [BR:
clv03400
]
102087906 (BRCA1)
Enzymes [BR:
clv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102087906 (BRCA1)
Protein phosphatases and associated proteins [BR:
clv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102087906 (BRCA1)
Ubiquitin system [BR:
clv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102087906 (BRCA1)
Multi subunit type E3
BRCC complex
102087906 (BRCA1)
Chromosome and associated proteins [BR:
clv03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102087906 (BRCA1)
DNA repair and recombination proteins [BR:
clv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102087906 (BRCA1)
BRCA1-A complex
102087906 (BRCA1)
BRCA1-B complex
102087906 (BRCA1)
BRCA1-C complex
102087906 (BRCA1)
BRCA complex
102087906 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
102087906 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
BRCT_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_6
zf-Nse
zf-RING_5
zf-MIZ
zf-RING_10
TRAF3_RING
Zf_2nd_IFT121
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
102087906
NCBI-ProteinID:
XP_021136713
LinkDB
All DBs
Position
Unknown
AA seq
1740 aa
AA seq
DB search
MRRMDLSVIGIGDVQNVLLAMQKNLECPICLDVIKEPVSTKCDHIFCRFCMFQLLSKKKK
GVIQCPLCKTEVTKRSLKENSRFKQLIEGLLETIHAFELDTGVKFLNSRHVPKTSTEATA
AELLGKERSVVQSKGFRNRNKSATGNGQENCTLEAHVDAPLTDTGDKRCSLRNKKQKCGS
QKGIYIELGSDSSEELFKQANHAGRLQDREALPISSQENAEELKSAEKGNEYPRTTQPDK
LGAEEVILPNVIGASDLSKEGSSKESTRSITEYAKPAHGNVAEYQSSPLNVLPAELTEQR
DSPVRNGDTSFFENTEEMDVEQTLCDSNSEEFDFKESRLDKSKEIDIAQSVEAAGMDEPE
NDPLSDKELPLEKLLQPEALDCAALNQVSRKRLKRSIQKVNEWFSKSEEIPSHDDSAGAT
DISGEGDTSLSDKESCVSQKTDPMVDSKETAVAEGNKRWSKETADSIKDKIFGKTYKRER
KSNPPFVFRDVLPTKKKEDAAADKSWNNSSKDRLKRRRKTVSVLRPEDFIKRKDVGEADG
CPESADLCLGDAEKKRCEESSAVDESRLSENKEGNTVAEVEEGGGSRWKKAAEKVTGKHC
DTEPDLNNSNQKSTKKNGSAAKRSRRSTRTMCALQLVVDRNSLSPDAAEPQIDSYPSSEE
PRKADSEQRQVRRSRRLQLLSEEMTKEMGKGVIKGAKKHESDPEGSFSGVQRNVLVHACE
CKEQREPRDVVSDQPLADLKGGDLEADEMQISLKNSLDAAGTGKILLNPTSCCQRSNYGS
LAPDTASQESEIRGSPLLLEPPSADSPLPEETSEPPAALPQGSRHETLKVPGDLRTERLP
MAKNGLEVTEEAEDGELDTQYLRNIFRHSKRLSFSLYPTPAKARAVGDAASETLKSSCAE
QGEDERSKYLKTESLQERTESLSRACGEEPRKAKESCVSPVTCFGDTECAQAEDHQDVSQ
VANQGKLTPMGMGTVRTEGKDKLQKGEQENEKAVSTDLGIGSELRQNPVKSKRSQSDQDD
TEVQVFERADLNTVDEMCSSSDSDQAGRAEGVNGKAPLPHFQYKSMICPVTCQQRPAELG
LEGTGKKHSKREREQVKGNEEAATQTAGTGMPEGLVTQALEEPVKGNSDFTGSSETPDGL
LCSDDDIEEKPSFSETDRRERSAVFVKSNNAPVTELRNRSVSSKPTSRGIPRSRRRARKL
QSSDEESSEDEELPCFQSLINGKSASTPLQSSKQVPSVVESSVSPIALPPHGSSGDNNAQ
KTPGAAPSGRCVSPSQESECSVNLFSSQSNMSEESVDGAQELKKLSVQVHPSKQVDEGKE
TSPSCNWGLKRSKPDSRDEGQEEQSMGANPGEASGSDSETSIVEDSCGPFSQGEILTTQQ
KNIMQNNLKKLQQEMAELEAVLEQHGSQDCQLLPVHRNLPHSSSEGTLGMEQMRQERGNA
DEQNSGTRLNSASVLPNVSGDVTRSPSKSCSSVRLLNPPSAEVTARSVAAPSADNSCTQE
CKSTRSSCLPTSVLHNAAGKESAASPVVTNRKEMSIVASGLTQSEHVVVQKFARKTRSTL
SNRITEGTTHVIMKTDKELVCERTLKYFLGIAGRKWVVSYQWVVQSFQEGRILDEESFEV
RGDVINGRNHQGPRRARQALTAKIFKDFEICCYGPFTDMTTEHLEWMVELCGASVVKQPH
LFTHTRNSTPVVVVQPDAWMEDADYGAIQQKADVAMVTREWVLDSVACYKCQELDTYLVS
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaggatggacttgtccgtgattggtattggagatgtacaaaatgtgcttttggcc
atgcagaagaacttggagtgcccaatatgcttggatgtgataaaggagccggtttcaaca
aaatgcgatcacatattctgcaggttctgcatgttccagctcctcagcaaaaagaagaaa
ggtgtgatacagtgtccactatgcaagaccgaggtcaccaagagaagtctgaaagagaat
tccagatttaagcaactaattgaaggattgctggaaactatccatgcgttcgagcttgac
actggagtaaagtttttaaacagtcgtcacgttcctaaaacatccacagaagccacggct
gccgagctcctgggtaaggaaaggtctgtcgtccaaagcaagggcttcagaaacaggaac
aaaagtgctacaggaaatggacaagaaaactgcaccttggaagctcatgtggatgctcca
cttacagatactggggacaaaaggtgttccctaagaaacaaaaagcagaaatgcggttct
caaaaagggatttatatagagctcggctctgattcatctgaagagctttttaaacaggcg
aaccatgctggcaggttacaagacagagaagcgcttccgatttcatctcaagaaaacgca
gaagagctcaagagtgctgagaaggggaatgaatatcctcgcactacacagcccgacaag
ctgggtgctgaagaagtgattctacccaatgtcataggtgcaagtgatctctcgaaggaa
ggctcgagcaaggaaagcactcggagcatcactgaatatgccaaacctgcccacgggaat
gtggctgaataccagagttcccctttaaatgttctccctgcagagctcacagagcagcgt
gacagtcccgtaaggaatggggacacgtctttctttgagaacacagaagaaatggatgtg
gagcaaactctatgcgatagtaatagcgaagagtttgacttcaaagagagcagattggat
aaaagcaaggaaatagatattgcacaaagcgtggaagctgcgggaatggatgaacctgag
aatgatcctctcagtgacaaagaacttcctctggagaagctgcttcagccagaggcactt
gactgcgctgccctgaatcaagtctcgaggaagaggctgaagcgaagcattcagaaagtc
aacgaatggttttcaaaaagcgaggagattccgtctcacgatgattctgctggagcaact
gacatttcgggtgaaggagacacatctttatcagataaagaatcctgtgtttcacaaaag
actgaccctatggtcgattccaaagaaactgcggtggctgaaggaaataagagatggtca
aaagaaacagcagatagtatcaaagacaaaatatttgggaaaacatacaagagagagagg
aagtcaaatcccccttttgtctttagagatgttttacctacaaaaaaaaaggaagatgca
gctgctgataagtcctggaataactccagcaaagacagactaaaacggagaaggaagact
gtcagtgtcctgcgacccgaggatttcatcaagagaaaagatgtaggggaggcagatggg
tgccctgaaagtgctgatttgtgccttggagatgctgaaaagaaaagatgtgaggaaagc
tctgctgttgatgagagtcgcctctctgagaataaagagggtaatacagtggcagaagtt
gaggaaggaggaggatccaggtggaaaaaagctgctgaaaaggtgactggcaagcactgt
gacacagagccggatttgaataactccaatcagaaaagcaccaaaaaaaatggttccgca
gcaaaaagaagcagacgttctaccagaaccatgtgcgccctgcagttagtagtggataga
aactccctgtcccctgatgcagctgagccccagatcgatagttatccaagcagtgaagaa
ccaaggaaagccgattcggagcaaagacaagtcaggcgcagcaggcggcttcagttactt
tctgaagaaatgacgaaagaaatgggaaaaggagtgattaagggagcgaaaaagcatgag
agcgaccccgaagggtctttctctggagtccagaggaacgtgttggttcacgcttgtgag
tgcaaagagcagcgtgagccccgcgatgtggtgagtgaccagccactcgctgatctcaag
ggtggggatctggaagcagatgaaatgcagatcagtctaaagaattcattggatgctgca
ggaactggaaaaattctcctcaatcctacatcttgttgtcagcgctcaaattatggttcc
ttggcacccgacacggcttctcaagaaagtgaaatacgaggaagccctttgctcctagag
ccgccttcagcggattcccccctgcctgaagagacgtctgaacctcctgctgctcttccc
cagggtagcagacacgaaacgctaaaagttccaggtgacttaagaactgaaaggttgcca
atggctaaaaatggcttggaagtgaccgaggaagctgaagacggtgagttagacacgcag
tatctgcggaatatatttaggcattcaaaacgcctgtcgtttagcctttatcctactcct
gcgaaggcgcgtgcagtaggagatgctgcttccgaaactctaaagagctcgtgtgctgag
cagggagaagatgagcgtagcaaatatttaaaaacagaaagcttgcaagagagaactgag
agcttgagtagggcttgtggggaagagccacgtaaagccaaggaatcttgtgttagtcct
gtgacttgctttggtgacactgaatgtgcacaggcagaggatcatcaggatgtttcacag
gttgcaaatcaagggaagctgacaccgatgggaatgggtaccgttaggactgaaggcaaa
gacaaattgcagaaaggagagcaggaaaatgaaaaggcagtgtcaactgacctagggata
ggaagtgagctgagacagaatccagtcaagagtaagagaagccaaagtgatcaagatgat
acagaagtgcaagttttcgaaagagctgatttaaacacagtcgatgaaatgtgcagcagt
tcagacagcgatcaagcgggaagggctgagggtgttaatggcaaagcaccgctaccacat
tttcagtacaaatcaatgatttgtcctgtaacgtgtcagcaacgacccgctgagctcggc
cttgaaggcactgggaaaaaacatagcaaaagagaaagagaacaagtaaaggggaatgaa
gaagcagcaactcaaactgctggcacagggatgcccgagggtttagttacacaggctctg
gaagagcctgttaaagggaatagtgattttacaggttcgtctgagacccctgatggcctg
ttgtgctctgacgatgatatcgaggagaaacccagcttttctgaaactgacaggagagag
agatctgctgtgtttgtgaaaagtaacaacgccccggtaacagaactacgcaatcggagt
gttagctctaagcccacatctcgaggtattcccagatctcgaagaagagcgcggaaactg
caatcttcagatgaagaatctagcgaggatgaagagttaccgtgttttcagtcgctaata
aatggcaaatcagcaagcacacctttgcagagcagtaaacaggtgccatctgtggtagag
tcttcagtaagtcccatcgcgttgcctcctcatggaagtagcggtgacaataatgcgcag
aaaacgcccggagctgccccaagcggcagatgtgtttcgccaagccaggaatccgaatgc
tccgtcaacttattttcctcccaatccaacatgtctgaagaatcagttgatggagcacaa
gagctgaagaaactgtcagtacaagttcatccatccaaacaagtggatgagggtaaagaa
acttctccaagttgtaattgggggctgaagagaagcaaacctgactccagagatgaaggc
caagaagagcaaagcatgggagcaaacccaggtgaagcgtctggatctgacagcgagaca
agtatcgtagaggattcatgtggcccgttctctcagggtgagatccttactacacagcag
aagaatattatgcaaaataacctaaaaaaacttcagcaagaaatggcagaactcgaggca
gtgctggagcagcacggaagtcaggactgtcaacttttacctgtccataggaacctgccg
cattccagtagcgaaggaacacttggaatggaacaaatgagacaagagagaggaaatgca
gatgagcagaattctgggaccaggctcaacagtgcgtctgtcttaccaaatgtctctgga
gatgtgaccaggagtccaagtaaatcctgctcctctgtaaggcttcttaaccctccaagt
gcagaagtgaccgctcgttctgttgcagctccaagtgctgataacagctgcactcaggag
tgtaaatcgacgagaagttcgtgtcttccaacgtctgttctgcacaatgcagctgggaaa
gaaagtgcagcgagtcccgttgtgaccaacaggaaagaaatgtcaatagtggcatcgggt
ctgactcaaagcgagcatgtggtggtccagaagtttgcgagaaaaactcggagcacttta
tctaatcgcattactgaaggaacaacccatgtcataatgaaaacagacaaggagctggtg
tgtgaacggacactcaagtactttctgggtatcgcagggaggaaatgggtcgttagttat
cagtgggtcgttcagtctttccaagaagggaggatactggatgaggagagctttgaagtt
cgaggagacgtaatcaacgggaggaaccaccagggtccaaggagggctcgacaggctctg
actgccaagatctttaaagactttgagatctgttgctacggacctttcactgatatgact
acagaacacctcgaatggatggtggaactttgcggtgcctccgtggtgaagcagcctcac
ctgttcacacacaccaggaattctactcctgtcgtggttgtgcagccagatgcttggatg
gaagacgcggattatggagcgatccagcaaaaagccgacgttgccatggtgactcgagag
tgggtattagacagcgtcgcgtgctacaagtgccaggagctggatacttacctggtgtcg
taa
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integrated database retrieval system
