Columba livia (rock pigeon): 102091738
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Entry
102091738 CDS
T02912
Symbol
THBS1
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-1
KO
K16857
thrombospondin 1
Organism
clv
Columba livia (rock pigeon)
Pathway
clv04115
p53 signaling pathway
clv04145
Phagosome
clv04148
Efferocytosis
clv04350
TGF-beta signaling pathway
clv04510
Focal adhesion
clv04512
ECM-receptor interaction
clv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
102091738 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102091738 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
102091738 (THBS1)
04148 Efferocytosis
102091738 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
102091738 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
102091738 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102091738 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clv04131
]
102091738 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
clv00536
]
102091738 (THBS1)
Membrane trafficking [BR:
clv04131
]
Endocytosis
Phagocytosis
Opsonins
102091738 (THBS1)
Glycosaminoglycan binding proteins [BR:
clv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102091738 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
TSP1_ADAMTS
Laminin_G_3
TSP1_CCN
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102091738
NCBI-ProteinID:
XP_005502344
LinkDB
All DBs
Position
Unknown
AA seq
1166 aa
AA seq
DB search
MGPATVLFLLLMLGVSETKRTAESRSDDNSVFDLFELIGFIRKGAGRRAPGVHLVKGPEP
SSPAYXPDSKFQDLLDAIHAEKGFILLANLRQAKKSRGTLLSVEQKDGSGHVFSLVSNGK
AGTLDLSLSGDGKQQLVSVEDALLATGHWKNITLFVQEDRAQLYVGCEKMENAELDIPIQ
NIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCSSSTNAIITLDN
PINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTLQDRVRKVTEEN
ELIAKVVQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRKVSCPLMPCSNATVP
DGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRCEGSSVQTRTCH
LQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKPCEGEARENKSC
QKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVGEAKGTQICNKQ
DCPIDGCLSNPCFAGTTCTSSPDGSWKCGDCPAGYHGDGVHCQDIDECKEVSDACFVFNG
VHRCENTDPGYNCLPCPPRFTGTQPFGRSVEDAMANKQVCKPRNPCTDGTHDCNKNAKCN
YLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCKKDNCPNLPNS
GQEDYDKDGIGDACDNDDDDDSIPDDRDNCPFIYNPQQYDYDRDEVGDRCDNCPYNHNPD
QTDTDNNGEGDACAVDIDGDGVLNEMDNCQYVYNVDQRDTDLDGVGDQCDNCPLEHNPDQ
EDTDSDLIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIP
DDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENVDISETDFRKFQMIP
LDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFFINTERDDDYAG
FVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPGEHLRNALWHTG
NTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMADSGPIYDKTYA
GGRLGLFVFSQEMVFFSDLKYECRDP
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggggccagcgactgttctttttctcctcctcatgctcggcgtctcggagaccaagcgc
accgcagagtccaggagtgatgataacagtgtcttcgatctctttgagctcatcggtttc
atccggaagggagctgggcgccgggcacccggggtgcacctggtgaagggaccagaaccc
tcaagccctgcttacncgcctgactccaagttccaagacttattagatgccatccatgct
gagaagggcttcattctcctggccaatcttcggcaagccaagaagagtagaggcacgctg
ctgtctgtggagcagaaggatggctctggccatgtctttagtctagtatcaaatggcaag
gcaggcaccctggacctgagcctttctggtgatggcaagcagcagttagtgtcagtagag
gatgccttgctggctacaggacactggaagaacatcaccttgtttgtgcaggaggaccgg
gctcagctctatgtggggtgtgagaaaatggagaatgctgaattggacatccccatccag
aacattttcactagggacctggccagcagtgccaggctccgtattgccaaaggaggagtc
aatgacaacttccagggactgctgcagaatgtgcggtttgtgtttggaacaactctggaa
actatcctgaggaacaaaggctgctccagctccactaatgcaatcattactttggacaac
cccatcaatggttccagcccagctatccgcactaattacattggccataaaacaaaggac
atccaagcagtctgtggtttttcctgtgatgaactaacaaatatgtttgtggaactgcaa
gggctccggtccatggttacaacacttcaagacagagttcgcaaagtgactgaagaaaat
gaactcattgccaaagtggtccagatcactcctggagtatgcattcataatggaatcttg
cacaaaaataaagaggagtggaccattgacagctgcactgaatgcacctgccagaactcc
gccactatatgccggaaagtgtcctgtcctctcatgccttgttccaatgccactgtgcct
gatggggagtgctgcccccgatgctggcctagcgactatgcagatgacggatggtctccc
tggtctgaatggacttcatgttctgtgacctgtgggaatgggattcagcagagaggccga
tcctgtgacagtctcaacaaccgctgtgaagggtcttctgtacagactcggacatgccac
cttcaggagtgcgataagagatttaaacaagatggtggctggagtcactggtcaccatgg
tcatcatgttctgtcacttgtggcacgggcattatcactagaattcgtctctgcaactct
ccagtaccacagctgaatggcaaaccttgtgagggtgaggcaagagaaaacaaatcctgc
cagaaggatccttgcccaattaacggcaactggggaccatggtctccgtgggatgcttgc
acagtgacatgtggaggagggctgcaaaaacgtagccgtctctgcaataatcctgagcct
cagtatggtgggaagacttgtgtaggtgaagctaaaggcactcagatctgcaacaaacag
gactgtccaattgatgggtgtctgtccaatccctgctttgcggggactacatgtaccagc
tcccctgatggctcctggaagtgtggtgactgtcctgctggctaccatggtgatggtgtc
cactgccaagatattgatgagtgcaaagaggtttctgatgcctgctttgtcttcaatgga
gtgcacagatgtgagaacactgatcctgggtacaactgtctgccttgtccaccacgtttc
acggggacacaaccatttggtcgcagtgttgaggatgccatggctaataaacaggtctgc
aagccacgtaatccatgcacagatggaacacatgattgcaacaagaatgccaaatgcaat
taccttgggcacttcagtgatcccatgtatcgctgtgaatgtaaaccaggctatgctggc
aatggcataatctgtggagaagatactgacttggatggatggccaaatgagaatcttgtt
tgtgttgccaatgccacttaccactgtaaaaaagataactgtcctaatctgcccaactct
gggcaggaagactatgataaggatgggattggtgatgcctgtgacaatgatgacgatgat
gatagtattcctgatgaccgggacaactgtccattcatctacaacccacagcagtatgac
tatgacagggatgaagtgggtgaccgctgtgataactgcccctacaatcacaaccctgat
caaacagacactgacaacaatggagaaggagatgcatgtgcggtcgatattgatggagat
ggggttcttaatgaaatggacaactgccaatatgtctacaatgtagaccagagggataca
gacttggatggtgttggagatcaatgtgataactgtcctctggaacacaatcctgaccag
gaagacactgattctgacctcataggtgatcagtgcgacaataaccaggatatagatgaa
gatggccatcaaaataaccttgataactgcccctatgtgcccaatgccaatcaagctgac
catgataaagatgggaaaggtgatgcttgtgaccatgatgatgacaatgatggtatccca
gatgacaaagataactgcagattggttgccaacccagatcaagctgattctgatggtgat
ggacgtggagatgcttgcaaagatgactttgaccaagacagtgtgccagacattgatgat
atctgccctgaaaatgtggacattagtgaaactgatttccgaaaattccagatgattccc
ctggatcccaaaggaacatcccaaaatgatccaaactgggtggttcgtcaccagggcaaa
gaactggttcagacagtcaactgtgaccctggccttgcagtcggttttgatgaattcaat
gctgtggacttcagtggcaccttcttcatcaatacagagagggatgacgattatgctggc
tttgtatttggctaccaatctagcagtcgtttctatgttgtcatgtggaagcagatcact
cagtcttactgggactccacaccaaccaaagctcaaggctactcaggtctctccatcaaa
gttgtgaattctaccactggtccaggagaacaccttcgtaatgctctgtggcacacaggc
aacactcctggccaggtgagaactttgtggcatgaccctcgtcacataggctggaaagac
ttcactgcatacagatggcgtcttagccatagaccaaagactggttacatcagggttgta
atgtatgaagggaagaaaatcatggcagactcgggaccaatctacgataaaacctatgct
ggtggtcggctaggattgtttgtcttctctcaagaaatggtgttcttctcagatcttaaa
tatgaatgcagagatccataa
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