Campylobacter lanienae: CLAN_0873
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Entry
CLAN_0873 CDS
T05075
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
clx
Campylobacter lanienae
Pathway
clx03030
DNA replication
clx03410
Base excision repair
clx03420
Nucleotide excision repair
clx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLAN_0873 (ligA)
03410 Base excision repair
CLAN_0873 (ligA)
03420 Nucleotide excision repair
CLAN_0873 (ligA)
03430 Mismatch repair
CLAN_0873 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clx03032
]
CLAN_0873 (ligA)
03400 DNA repair and recombination proteins [BR:
clx03400
]
CLAN_0873 (ligA)
Enzymes [BR:
clx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLAN_0873 (ligA)
DNA replication proteins [BR:
clx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLAN_0873 (ligA)
DNA repair and recombination proteins [BR:
clx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLAN_0873 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLAN_0873 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLAN_0873 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLAN_0873 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH_5
DNA_ligase_ZBD
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
ARQ97618
UniProt:
A0A1X9SN44
LinkDB
All DBs
Position
complement(862446..864392)
Genome browser
AA seq
648 aa
AA seq
DB search
MNHKEYLEAVETLNRWAKAYYTDDNPIASDDEYDALYHKVVEFESQNPNLKAIFSPTNRV
GGEILEQFEKIAHKARMWSMEDIFSDDELLAWIERGDKRSQRFFVEPKFDGASLNLTYEN
GVLKSAATRGDGDIGEDVTNNAKVISSIPFKIPYDGLIEIRGEVVIAKSDFEEINAKRQK
DGLSLLANPRNAAAGSLRQLDSSITKSRRLKFYPWGVGANELKFSTHSDMMEFVRSLGFL
RDDFVRVCNSIDEIKQAFKDLLAIRDEKPIMMDGMVVRVDDLAKCDELGFTVKFPKFMVA
YKFPATQKTAKLIGVALQVGRTGVITPVGLLDGVEIDGAFVKNVTLHNFDEIERLGLMRG
DFVCVIRSGDVIPKIIEVYKDRRDGTQTKIERPNSCPKCGSELLDEGVFIKCQNLSCEAR
VVSSIIYFASKKCMNIDGLGDAIIELLYKNSKISNITDIYRLDKSSFDGLEGFKDKKIEN
ILNAINMSKTPPLHRFITSLGIEHIGEVAAKKIATTYMDNWLNLNQDELLSLDGFGEAMA
LSYLEFMRVNRSKIMELMEFVKPKYEDIKLTQNIFSSKTIVITGTLSRPRDEIKKELESF
GAKVSNSISSKSDYLLSGESSGSKYDKALSLGVKIIDEKEYERLKNES
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaatcataaagagtatttagaagcagttgagacgctaaatagatgggcgaaggcttat
tatactgatgataatcccatagctagtgatgatgagtatgatgctttgtatcataaggtg
gttgagtttgagagccaaaatccaaatttaaaagctatattttcacctactaatagagtt
ggtggcgagattttagagcagtttgagaagatagcccacaaagctagaatgtggtcgatg
gaagatatttttagtgatgatgagcttttggcgtggatagagcgtggggataagcgctca
caaagattttttgtagagcctaaatttgatggggcgagcttgaatttaacctatgaaaat
ggagttttaaaaagcgcagccacaaggggtgatggcgatatcggagaggatgttactaat
aatgctaaggtgattagctctattccttttaaaattccttatgatgggttgattgagatt
aggggtgaggttgttatagctaagagtgattttgaagagattaatgctaagcgtcaaaaa
gatggcctaagcctattagccaatcctagaaatgccgccgctggtagtctaagacagcta
gattctagcataaccaaatctagaagattgaaattttatccatggggcgtgggggcaaat
gagcttaaatttagcactcatagcgatatgatggagtttgtaagatcgcttggattttta
agggatgattttgtcagggtttgtaatagtatagatgagattaaacaagcctttaaagat
cttttagctataagggatgaaaagcctataatgatggatgggatggtggttagagtagat
gatctagctaagtgtgatgagctaggatttactgtgaaatttcctaaatttatggtggcc
tataaattccccgctacacaaaaaacggctaaattaatcggtgtagcactgcaagtaggt
agaactggtgtgataactcctgttggtttgctagatggagtggagatagatggagcattt
gtaaaaaatgtaaccttgcataacttcgatgagatagagcgtctggggcttatgaggggg
gattttgtctgtgtgattagaagtggtgatgtgatacctaagattatagaggtgtataaa
gatagaagagatggcacacaaaccaagatagaacgaccaaattcttgtccgaaatgcggt
agtgaacttttggatgagggggtatttataaagtgtcaaaatttgagttgtgaggctagg
gtggtaagctcgattatatattttgcttctaaaaagtgtatgaatatcgatggtcttggt
gatgcgataatagagttattgtataaaaattcaaaaatatcaaatataacagatatttat
agattagataagagtagctttgatggattagagggatttaaagataaaaagattgagaat
attttaaatgctataaatatgagcaaaaccccgccacttcatagatttatcacatcttta
gggattgagcatattggtgaagtagcagcgaaaaagatagctacaacttatatggataat
tggttaaatttaaatcaagatgagcttttaagccttgatggatttggtgaggcgatggcg
cttagttatttggagtttatgcgtgttaatcgctctaagattatggagcttatggagttt
gtaaagccaaaatacgaagatattaaactcactcaaaatatatttagctctaaaaccata
gttattacaggcacactctctcgccctagagatgagatcaaaaaggagctagagagcttt
ggggctaaggttagtaactctatatcatctaagagtgattatctattaagcggagagtca
agtggaagcaaatatgacaaggctctatctttaggcgttaaaatcatagatgaaaaagag
tatgagagattaaaaaatgagagctga
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