Cellulophaga lytica DSM 7489: Celly_3296
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Entry
Celly_3296 CDS
T01434
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cly
Cellulophaga lytica DSM 7489
Pathway
cly03030
DNA replication
cly03410
Base excision repair
cly03420
Nucleotide excision repair
cly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Celly_3296
03410 Base excision repair
Celly_3296
03420 Nucleotide excision repair
Celly_3296
03430 Mismatch repair
Celly_3296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cly03032
]
Celly_3296
03400 DNA repair and recombination proteins [BR:
cly03400
]
Celly_3296
Enzymes [BR:
cly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Celly_3296
DNA replication proteins [BR:
cly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Celly_3296
DNA repair and recombination proteins [BR:
cly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Celly_3296
NER (nucleotide excision repair)
GGR (global genome repair) factors
Celly_3296
MMR (mismatch excision repair)
DNA ligase
Celly_3296
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Celly_3296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
AphA_like
BRCT_2
Auto_anti-p27
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ADY31112
UniProt:
F0RF96
LinkDB
All DBs
Position
complement(3758724..3760718)
Genome browser
AA seq
664 aa
AA seq
DB search
MSVKEQIEALREELRKHNHNYYVLDTPTISDYDFDIKLKELQALEAKHPEFYDANSPTLR
VGGEITKNFNTVVHEHRMYSLDNSYSKEDLLDWEKRVEKILGDSNIEFTCELKYDGASIS
LTYEEGKLVRAVTRGDGFQGDDVTTNIKTIKSVPLQLKGDYPAKFDIRGEIVLPFEGFYK
MNEERIANGEDPYMNPRNTASGSLKLQDSSLVAQRPLECLLYSVVGANLNLETQFEALEK
TRSWGFKVPTVAKLCKSVDEVMAFVEYWDVHRHELPYETDGVVVKVNTLRYQEELGYTSK
SPRWAMAYKFKAEQVSTVLNEISYQVGRTGAITPVANLAPVLLAGTTVKRASLHNADQIE
KLDVRVGDAVFVEKGGEIIPKIVGVNLDLRPQNSEPTKYIDHCPECNTELIRTEGDAKHY
CPNEYGCPPQITGKIQHFISRKAMDIDGLGSETVELLFKEGLIQNYADLYALTVDQLLPL
ERMAKKSAENLVKGVAASVEIPFERVLFALGIRFVGETVAKKLAKAYKNIDALMYASALE
LATVDEIGERIASSVVAFFQNEINLDIINRLKGYGLQFQVSAEKLLNQTEKLKGETYVVS
GVFEMSRNDLKKLIEDNGGKVGSSISSKTTFLVAGDKMGPSKRTKAESLNVPIISEQEFL
AKLS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaaaagagcaaattgaagcgttacgtgaagagttgcgtaagcacaaccataat
tactatgttttagatactccaacaatatcagattatgattttgatataaagttaaaagag
ctacaagcattagaggctaagcacccagagttttatgatgctaattcgcctacactacgt
gtgggtggtgaaatcactaaaaactttaatacagttgtgcatgagcacagaatgtattct
ttagataactcgtactctaaagaagatcttttagattgggaaaaaagagtagagaaaata
ttaggagattctaatatagaatttacgtgcgagttaaagtatgacggagcttcaataagc
ttaacttatgaggagggtaaattagtgcgtgctgttactcgtggagatggttttcaggga
gatgacgtaaccactaacataaaaacaattaaatctgttccgttacagttaaaaggagat
taccctgctaagtttgatattagaggggaaattgtgttgccgtttgagggtttttataaa
atgaacgaagagaggatagccaatggcgaggatccttatatgaaccccagaaatactgca
tctggtagtttaaaattgcaagatagttctttagtggcgcaacgcccgttagagtgtttg
ctgtatagtgttgttggtgctaatttaaatttagaaacacagtttgaagcgttagaaaaa
acacgttcatggggatttaaagtgccaactgtagctaaactatgtaagagtgtagacgag
gttatggcttttgttgagtattgggatgtgcataggcatgagctaccatatgaaacagat
ggtgttgtggttaaagttaatacgctgcgttaccaggaggagttaggttacacctctaaa
tcgccacgttgggctatggcttataagtttaaagcagagcaagtttctacagttttaaat
gaaataagttaccaagttggtcgtacaggagcaattactccagttgcaaatttagcgcct
gttttgttggcaggtacaacggttaaaagagcatctttacacaatgcagatcaaatagaa
aagttagatgttagggtaggagatgctgtttttgtagaaaaaggaggagaaataatacct
aaaattgttggtgtaaatttagatttgagaccacaaaattctgaacctacaaaatatata
gaccattgccctgagtgtaatacagagttaattagaaccgaaggagatgccaaacactat
tgtccaaacgagtatggttgtccgccgcaaataacaggtaaaattcagcattttatatct
agaaaagcaatggatattgatggtttagggagcgaaactgttgagctattgtttaaagag
gggttaatacaaaactatgcagacctgtatgctttaactgtagaccagttgttgccttta
gagcgtatggcgaaaaaatctgcagaaaatttggtaaaaggtgtagctgcttcagtagaa
ataccttttgagcgtgtgttgtttgctttaggtatacgttttgttggtgagactgttgct
aaaaagttagctaaagcttataaaaacatagatgctttaatgtatgcatctgcattagaa
cttgctactgtagatgaaataggagagcgtatagcatctagtgtagtagcattttttcag
aacgaaattaatttagatattataaacaggttaaaagggtatggacttcaatttcaggtt
tcggcagaaaaacttttaaatcaaactgaaaaattaaaaggagagacttatgttgtttct
ggtgtctttgaaatgagtagaaacgacctaaaaaaactaatagaagacaacggaggtaaa
gttggatcttctatttcttctaaaacaacttttttagttgccggagataaaatgggccct
agtaaacgaactaaggcagaaagtttaaatgtgcctattatctcagagcaagaatttttg
gctaaattaagttaa
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