KEGG   Croceicoccus marinus: A9D14_12715
Entry
A9D14_12715       CDS       T04890                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cman  Croceicoccus marinus
Pathway
cman03030  DNA replication
cman03410  Base excision repair
cman03420  Nucleotide excision repair
cman03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cman00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A9D14_12715
   03410 Base excision repair
    A9D14_12715
   03420 Nucleotide excision repair
    A9D14_12715
   03430 Mismatch repair
    A9D14_12715
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cman03032]
    A9D14_12715
   03400 DNA repair and recombination proteins [BR:cman03400]
    A9D14_12715
Enzymes [BR:cman01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A9D14_12715
DNA replication proteins [BR:cman03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A9D14_12715
DNA repair and recombination proteins [BR:cman03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A9D14_12715
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A9D14_12715
   MMR (mismatch excision repair)
    DNA ligase
     A9D14_12715
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A9D14_12715
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB DNA_ligase_ZBD BRCT HHH_2 Nlig-Ia PTCB-BRCT
Other DBs
NCBI-ProteinID: ARU17521
UniProt: A0A1Z1FFC9
LinkDB
Position
2672722..2674872
AA seq 716 aa
MRLARQIRRHNRLYHADDAPEISDAEYDALVRRNAELEEAFPHLVRPDSPTQDVGHDVAA
SPLSKVRHEVRMMSLDNAFDDEEVAEFAARVRRFLALDAEEPVAFTAEDKIDGLSCSLRY
EGGRLVRAATRGDGQVGEDVTANALHIPDIPQQLNGDVPEIFEVRGEVYMERAAFRALNE
ALMEEARAKAEAKGEPFDPESVRQFANPRNAAAGSLRQKDASVTAKRPLRFWAHGWGAAS
AVPGETQHDVVKALQGWGLPVSPDFRICHSLDEMYAAYHAIAEGRAGLPYEIDGVVYKVD
RLDWQQRLGFVAKAPRWALARKFPAERAETVLETIDIQVGRTGKLTPVGRLAPVLVGGVT
VTNVTLHNRDEIARLGVRPGDRVVIQRAGDVIPQVVENLTRPEDGDEDRPPFPFPDHCPE
CGSEAVAEEGEVDVRCTGGLICPAQRTERLKHFVSRGALDIEGLGEKTIDEFFALGWLES
PADIFRLKDRREAILSLEGWQDKSVDNLLAAVDNKRTPDAARLLFGLGIRHIGAVTARDI
LKGIGDIRLLPAKARELFDYRDAHPRGPAEAISPFKSRMADKAKNVLGGADGIGWAVGEA
LADFFHEDHNLDVWNDLIGARPGGGVVDPPPYVVETKESRVSGMTVVFTGKLETMSRDEA
KAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAEELGIEVIDEAGWAAIVAAAG
NT seq 2151 nt   +upstreamnt  +downstreamnt
atgcggctggcgcgccagatccggcggcacaaccggctgtatcacgccgacgacgcgccc
gagatttcggatgcggaatatgacgcgctggtccgccgcaatgccgagctggaagaggcc
tttccgcatctggtgcggcccgacagccccacgcaggacgtggggcacgacgtcgccgcc
tcgccgctgtcgaaggttcgccatgaggtccggatgatgagcctcgacaatgcgttcgac
gacgaggaagtggccgaattcgcggcgcgcgtgcgtcgcttcctggcgctggatgcagag
gagccggtggccttcactgccgaggacaagatcgacggcctctcctgttcgctgcgctat
gagggcggccgcctggtgcgcgccgccacgcgcggcgacgggcaggtgggcgaggatgtg
accgccaatgccctgcatattcccgacatcccgcagcagctgaacggcgacgtgcccgag
atcttcgaggtgcgcggcgaagtctacatggaacgcgccgcctttcgcgcgctgaacgag
gcgctgatggaagaggcccgcgccaaggccgaggcgaaaggcgagccgttcgatcccgaa
agcgtccgccagttcgccaacccgcgcaatgccgccgccggatcgctgcgccagaaggac
gctagcgtcaccgccaaacgccccttgcgcttctgggcgcatggctggggcgcggccagc
gccgttccgggcgagacgcagcacgatgtggtgaaggcgctgcaaggctggggcctgccc
gtctcgcccgacttccgcatctgccattcgctggacgagatgtatgccgcctatcacgcg
atcgccgaagggcgggcgggcctgccctatgagatcgacggcgtcgtctacaaggtcgac
cggctggactggcagcagcggctgggcttcgtggccaaggcgccgcgctgggcgctggcg
cgcaagttccctgccgagcgggccgaaacggtgctggagaccatcgacatacaggtcggg
cgcaccggcaagctgactccggtgggcaggctggccccggtgctggtcggcggcgtgacc
gtcaccaatgtcacgctgcacaaccgggacgagatcgcgcggctgggcgtgcgtcccggc
gaccgcgtggtgatccagcgcgcgggcgacgtgatcccgcaagtggtcgagaacctgacg
cggccagaggacggggacgaggaccgccccccctttcccttccccgaccattgccccgaa
tgcggcagcgaggcggtggccgaggaaggcgaggtcgacgtgcgctgcaccggcggcctg
atctgccccgcccagcggaccgagcgcctgaagcatttcgtcagccgcggcgcgctggat
atcgaggggctgggcgagaagaccatcgacgagttcttcgcgctgggctggctggaaagc
cccgccgacatcttccggctgaaggaccggcgcgaagcgatcctcagccttgaggggtgg
caggacaagtctgtcgataatctgttggcggcggtggataacaagcgcacgcccgatgcg
gcacggctgctgttcgggctgggcatccggcacatcggcgcggtgacggcgcgcgatata
ttgaagggcatcggcgacatccgcctgctgcccgccaaggcgcgggaactgttcgactat
cgcgacgcccatccgcgcgggcccgccgaggcgatcagcccgttcaagtcgcgcatggcg
gacaaggccaagaacgtgctgggcggcgcggacggcatcggctgggccgtgggcgaggcg
ctggccgatttcttccacgaggatcacaatctcgacgtgtggaacgacctgatcggcgca
aggcctggcggcggcgtggtcgatcccccgccctatgtggtcgaaacgaaggaaagccgc
gtatcgggcatgaccgtggtctttaccggcaagctggaaaccatgagccgcgacgaagcc
aaggcgcaggccgagcggctgggcgccaaggccgccggatcggtcagcgccaagaccgac
ctgttggtcgcgggccccggcgcgggatcgaagctgaaaaaggccgaggaactggggatc
gaggtgatcgacgaagccggctgggccgcgatcgtcgcagcggcgggatag

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