Colossoma macropomum (tambaqui): 118798288
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Entry
118798288 CDS
T09004
Symbol
lig4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118798288 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmao03400
]
118798288 (lig4)
Enzymes [BR:
cmao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118798288 (lig4)
DNA repair and recombination proteins [BR:
cmao03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
118798288 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
118798288
NCBI-ProteinID:
XP_036413596
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
MMEGPSKSDATPGTSKSDVTSVAAQVPFLHLCTVLEKIQKTKLRPDKAKFLKDFMDSWRK
FHAALHKDNPNTTDSFYAAMRLIVPPFERERMAYGIKENMLAKLYIEVLGLPKTGPEANK
LLNYRAPTTSQGEAGDFALTAYFVLKKRCTSQGNLSIKEVNDFLDSVAMNNASKQKDLVK
KNLLHLITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAPELYNVTTDLDKVCRQL
HDPSISLNEVSIGLFSAFKPMLAAVANIRQVEKQMGNQTFYLETKLDGERIQLHKDGDVY
KYYTRNSFEYTQQFGASPLEGSLTPYIHNVFKPHVVNCILDGEMMAYNSMTETFMQKGNK
FDIKRLMDDSDLQTCFCVFDVLLVNDQKFGNEPLKKRYDTLQTVFTPIKGRIQLVPRTEA
KTMQEVVNALNEAIDDREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVG
GYWGKGRRSGMLSHFLCAVAETPAPGEKPTVFHTLCRIGSGYTMKELYDLGLKLAKHWKV
YRKNDPPAAILCGTEKPEVYIEPRNSVILQVKAAEIVTSDMYKTNCTLRFPRIERIREDK
EWHQCMTLDELNQFRTKASGKLASRHFQIQEDQPDKKKRKLGPKSKKTIGIIDHFKSQDL
SAVTKETDMFEDVEFCVMNGNDTHSKAELEKAVARCGGIVVQNPGKDTYCVIAGVENMRV
KNLIRSDQHDVVWASWLLECLERKQVLPWQPRHMIHMSPSTREHFAKEYDRYGDSYYIDT
DEQQLRDVFGRIEPAEVEPTFAASVEEKYGWDDLPTSMFRPYCAYFDQCADIDDLKSLIR
GTCLDTRALEFRFHGGTVVEKLEEGISHVVVSEEVRLLDLRTLRRLFTKKFKIVRETWVT
DSIKAGHLLNDNDYLM
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgatggagggaccgtctaaaagtgatgctacacctggaacctccaaaagcgatgttacg
tctgttgctgctcaagtgccatttcttcacctgtgcacagttctggagaagatacagaaa
accaaacttagaccagataaagccaagttcttaaaagatttcatggattcatggagaaag
tttcacgcagcccttcacaaggataatcccaacactacagactcattctacgcagccatg
cgtctaattgtgcctccgtttgaaagggaacgaatggcctatggtatcaaagaaaacatg
ttagccaaactctacattgaggttttgggtcttccaaaaactggcccggaagcaaacaaa
cttctcaattacagagcccccactacatcccagggggaagcaggagactttgcccttaca
gcttactttgttctcaaaaaaagatgcacaagccaaggtaatctaagcattaaagaagtc
aatgactttttagactctgtagctatgaataatgctagcaaacagaaagaccttgtgaaa
aaaaaccttctacatctaattactcagagctcagctctggagcagaagtggctcattcgt
atgatcctgaaagatatgaaacttggtgttagtaaggaaacagtgctccaggttttccac
ccagatgctccagaactctacaacgtcaccacagacttggataaagtttgtagacagctt
cacgatccctccatttccttgaatgaggtatccattggtctcttctctgctttcaaaccc
atgctggccgctgtagccaacatccgccaagtagagaaacagatgggaaaccagaccttt
taccttgaaactaagctggatggtgaacgtattcagcttcataaagatggggatgtttac
aaatattacacgcgcaactcatttgagtatacacagcagtttggggcctcaccactagag
ggttccctcacaccatacatccataatgtcttcaagcctcatgtggtcaactgcatctta
gatggggaaatgatggcttacaattccatgacagagaccttcatgcaaaaaggcaacaag
tttgacatcaagaggctaatggacgactcagatttacagacttgcttttgcgtgtttgac
gtccttcttgtcaacgaccagaagtttggaaatgagcctctcaagaagcgttacgacact
ctccagacggtgttcacacccatcaaaggccggatccagctggtgcccagaactgaagcc
aaaaccatgcaggaagtggtgaatgcccttaacgaagccatcgatgaccgggaagaaggg
atcatggtcaaagaccccatgtccatctacaagccagacaaacgtggtgaagggtggctg
aagatcaaacctgagtatgtggatggtttgatggatgaattggatttgctgatagtggga
ggctactgggggaaaggtagacggagtgggatgttgtcccacttcctctgtgctgttgca
gaaactccagctcctggagagaagcccacagtgttccacacgctgtgccgcattggatca
ggctacaccatgaaggagctatatgaccttggcctgaaactggccaaacactggaaagtt
taccgcaagaatgaccctccagcagccattctgtgtggaacagagaagcctgaggtttac
attgagccacggaactcggtgatcctccaagtgaaagcagcggagatagtaaccagtgac
atgtataagactaactgcacactgcgtttcccccggattgagaggatcagagaggacaag
gaatggcatcagtgcatgaccttggatgagctaaatcagttccgtacgaaggcttcgggt
aagctggcgtccaggcacttccaaatccaggaagaccagccggacaagaagaagcgtaag
cttgggcctaagtccaagaaaaccattggtatcatcgaccacttcaaatctcaagacctc
tccgcagtcactaaggagacggacatgtttgaagatgtggaattctgtgtgatgaatgga
aacgatacccattctaaagctgagcttgagaaggctgtggcccgttgcggagggattgtg
gtgcagaaccctggaaaggacacctactgtgtcattgctggtgtggagaacatgagggtg
aagaacctcatccgttccgaccaacatgatgttgtatgggcttcctggctgctggaatgt
ctggaaaggaaacaggtgctaccatggcaaccacggcacatgatccacatgtcgccttcc
acgagggagcactttgctaaagagtatgatcgctatggagacagttactacatcgacacg
gatgagcagcagctgagagacgtcttcggcagaattgaacctgctgaagtggagccgacc
tttgcagcttcagtagaggagaagtacggctgggatgacttgcctactagcatgttcaga
ccgtactgtgcgtactttgatcagtgtgctgacatcgacgacctaaaaagtctcatccgg
ggtacatgtttagacactagggctctggaattccgctttcatggaggcactgtggtagaa
aaactggaggaaggcatctcgcatgtggttgtgtcagaagaggtgagattattggacctg
aggacattgagacgtctgtttacgaagaagttcaagattgttcgagaaacatgggtgact
gattcaattaaagcgggacacttactgaatgacaatgattacctcatgtaa
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integrated database retrieval system
