Colossoma macropomum (tambaqui): 118821446
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Entry
118821446 CDS
T09004
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118821446 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118821446 (eftud2)
Spliceosome [BR:
cmao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118821446 (eftud2)
Complex C
U5 SnRNP specific factors
118821446 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
118821446
NCBI-ProteinID:
XP_036445945
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDEDEDVDADERDADEADEDDDDEDQVEGDEDGGGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKQFTLMEQELPATVYDMEFLAD
LMDSSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGI
KSTPVTMVLPDSKGKSYLFNIMDTPGHVNFSDEVTAGMRISDGIVLFIDAAEGVMLNTER
LIKHAVQERLAITICINKVDRLILELKLPPTDAYYKLRHIVDEVNGMLSTYSTDESLVVS
PLLGNVCFASPQYSICFTLGSFAKIYADTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
NSNSQRSFVEFILEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQQIPSPYGGARAKIEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKM
YSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGTEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagatctgtatgatgagtttggtaactacatcgggccggagttggactctgat
gaagatgaagatgtagacgcagacgagagagatgcagatgaggccgatgaggatgatgat
gatgaagaccaggttgagggggatgaggatggtggtggaatggaggtggtacttcatgag
gataaaaagtactatcctactgcagaggaagtctatgggcccgaagtggaaaccattgtc
caagaagaagacacccagcccctgactgagcctattataaaacctgtcaaaacaaagcag
ttcactcttatggagcaggagttgccagcaacagtttatgacatggagtttcttgctgat
ttgatggacagctcagagctgattcgaaatgtcactctgtgtgggcacttgcatcatggc
aagacatgctttgttgactgcttgattgaacaaactcatccagaaatccgcaagagagat
gatgctgacctgcggtacacagacatccttttcactgaacaagagagaggagttggtatt
aagagcacaccagtgacaatggtgttgcctgactcaaaagggaaatcatacctgttcaac
attatggacactccaggtcatgtgaacttctctgatgaggtcactgcagggatgcgcatc
tcggacgggattgtgctgttcatagacgctgcagagggggtgatgttgaacacagagcgg
ttgattaagcatgcagtgcaggagcggttagcgataaccatctgcattaacaaagtggac
agactgatcttggagctcaagctgccccctactgatgcttactacaaactgcgccacata
gtggatgaagtcaatggcatgctgagcacatattcgactgatgagtctctggtagtgtct
cctctgttgggcaatgtatgttttgcttcaccacagtacagcatctgctttacacttggg
tcttttgcaaaaatctacgctgatacctatggtgacataaactacaatgagtttgcaaag
agactatggggagacatctactttaaccccaaaacgaggaagttcactaagaaagccccc
aacagcaactcacagcgcagttttgtggagtttattctggagccgctttacaaaattctc
tcgcaggtggtcggagatgtggacacatctttgccgcgagtgctggatgagctgggaatc
cacctgaccaaagaggagctcaaactcaacattaggcctcttctgcgccttgtgtgcaac
cgcttctttggagagttcacaggttttgtggacatgtgcgtgcagcaaatcccatctcct
tacggtggcgccagagcaaagattgagcacagctacacgggaggactggactcagacctt
ggggaggccatggctgaatgtgaccctgatggtcccctgatgtgtcacaccactaagatg
tacagcacagacgatggagttcagtttcacgcttttgggcgggttctgagtggaactctt
caggctggccagccagtgaaggttttaggagagaactacactctggaggacgaggaggac
tcacaggtgtgcactgtcggtcgcctgtggatatctgtagccaggtaccagattgaagtg
aatcgtgttcctgctggtaactgggtgctaattgaagggtgtgaccagcccattgtcaaa
acagccaccatcacagagccccggggcacagaagaggctcagatcttcaggccgctgaag
tttaacactgcctcagtgatcaagattgctgtggagcctgtgaacccttctgaactgcct
aagatgttggatggcctcaggaaggtcaacaaaagctacccctctctcacaaccaaggtg
gaggaatctggtgaacacgttattctaggcacaggtgagctgtacctggactgtgtgatg
catgacctgaggaagatgtactcagagattgatattaaggtggctgatccagtagtgacc
ttttgtgagacagtggtggaaacatcttccctcaagtgctttgctgaaacgcccaataaa
aaaaacaagatcaccatgattgccgagcctctggagaaagggcttgctgaggacattgag
aacgaggtggtgcagattacatggaacaggaagaagctgggagagtttttccagactaag
tacgactgggatttgcttgctgctcgttcaatctgggcttttggacccgacaccactggg
cccaacatcttggtagacgatacactgccctcagaggtggataaagctctccttggctcg
gtgaaggacagcatcgtacagggcttccagtggggaactagagaaggccccctatgtgat
gaacccatccgtaatgtgaagtttaagattctggatgcagtaatagcccaggagccgtta
cacaggggaggagggcaggtcattcctactgcaagaagagttgtctattcagctttcctc
atggccacgcccaggttgatggagccctattactttgtggaggttcaagctcctgctgac
tgtgtatctgctgtctacactgtactggcacgcagaagaggtcatgtgacacaggatgca
ccaatcccaggctcacctctatacaccatcaaagctttcatccctgcgattgactctttt
gggtttgagacggatctccgcacacacacgcaggggcaggctttcgccctcagtgtgttc
caccactggcagattgttcctggtgatcctctggataagagcattgtgattcgtccgttg
gagcctcagcctgcccctcacctcgccagagagttcatgatcaaaacccgcagacgcaag
ggtctgagtgaggatgtcagtatcagtaagttcttcgacgatcctatgttgttggagttg
gccaagcaggatgtagtgcttaactatcctatgtga
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integrated database retrieval system
