Celeribacter marinus: IMCC12053_496
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Entry
IMCC12053_496 CDS
T04098
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmar
Celeribacter marinus
Pathway
cmar03030
DNA replication
cmar03410
Base excision repair
cmar03420
Nucleotide excision repair
cmar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMCC12053_496
03410 Base excision repair
IMCC12053_496
03420 Nucleotide excision repair
IMCC12053_496
03430 Mismatch repair
IMCC12053_496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmar03032
]
IMCC12053_496
03400 DNA repair and recombination proteins [BR:
cmar03400
]
IMCC12053_496
Enzymes [BR:
cmar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IMCC12053_496
DNA replication proteins [BR:
cmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IMCC12053_496
DNA repair and recombination proteins [BR:
cmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IMCC12053_496
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMCC12053_496
MMR (mismatch excision repair)
DNA ligase
IMCC12053_496
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMCC12053_496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ALI54445
UniProt:
A0A0N7HI76
LinkDB
All DBs
Position
complement(502499..504625)
Genome browser
AA seq
708 aa
AA seq
DB search
MSADTPLDQVNVEALTRDQAAVELARLAAVLMQANTAYHTADAPVMDDASFDALKRRNAA
IEHRFPNLKRADTPTDQVGAAPSDGFGKITHAVRMMSLSNGFEDADIREFDASVRKYLAA
PGEIAYTAEPKIDGLSLSLRYENGILMHAATRGDGAVGENVTANARKITSIPQLIDGAPD
VLEVRGEVYMTHADFAALNARHAERGGKTFANPRNAAAGSLRQLDAEITRARPLAFFAYA
WGELSAPLADTQMGAIAQLSAFGFATNPLTQRFTDLAQMLDHYRQIEAARATLGYDIDGV
VYKVDRLDLQRRLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLSPVT
VGGVVVSNATLHNEDYIAGYDSKGETIRGGKDIRIGDWVQVYRAGDVIPKIADVDLSKRP
EVTTPFEMPVSCPECGSDAIREEGDAVRRCSGGMICPAQAVEKLKHFVSRGAFDIEGLGA
KQVEQFYHDGWVREPADIFTLRDRFGSGLQQLKNREGWGAKSAANLFDAIDEKRTIPLAK
LIFALGIRHVGENSATLLATSYGAWDTFEAAMTHAELGRGAAWAELLDIDGVGAVMAGSL
VAAFHQERERASIDRLVAHLSVINAESPTSDSPVSGKTVVFTGSLEKMTRAEAKARAESL
GAKVAGSVSKKTDLLVAGPGAGSKEKKAAELGVATLDEDGWLALIGDA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagatacgccgttggatcaggtgaatgttgaggcgttgacccgcgatcaggcg
gctgtggaacttgcgcgtctcgccgctgttttgatgcaggccaataccgcctatcatacc
gccgatgcgcctgtgatggatgacgccagtttcgacgcgctcaagcggcgcaatgcggca
atagaacaccgatttccaaaccttaaacgtgcggacacgcccacagatcaggtcggcgca
gctccgtccgatgggtttgggaaaatcacacacgcggttcggatgatgtcgctctccaac
gggtttgaggatgcggatatccgtgagtttgacgcctctgtgcgtaaatacctcgccgca
ccgggcgaaattgcctacacagccgagccaaagattgacgggctatcgttatccctacgc
tatgaaaacggtattctgatgcacgcggcgacccgtggcgatggtgccgtgggcgaaaac
gtgacggccaatgcccgcaagatcacgtctatcccgcaattaatcgacggtgcgcctgat
gtgttggaggtgcgcggcgaagtctacatgacccacgccgatttcgccgctctcaatgcg
cgccatgctgagcgtgggggcaaaacattcgccaatccgcgcaacgccgccgccggatcg
ctccgccaactcgatgccgagattacccgcgcgcgccccttggcgttttttgcctatgca
tggggcgaattgtccgcgcctttggccgacacacaaatgggcgcgattgcgcagttgtcc
gcattcgggttcgcaaccaacccactgacgcaacggttcacggatctcgcacagatgctg
gatcactaccgccagatcgaagcggcccgcgccacacttggctatgacatcgacggcgtg
gtctacaaggtggatcgccttgatttacaacgccgtttggggttccgatccaccacgcca
cggtgggcaatcgcgcataaattccccgccgaactggcatggacgcggcttgaggggatc
gacattcaagtcggccgcaccggtgcgctatcgcccgtggcccgtctgtcgcccgtcacc
gtgggcggtgtcgtggtgtcgaacgccactttgcacaacgaggattatatcgccggatat
gacagcaagggcgagaccattcgcggcggcaaagacattcggatcggcgactgggttcag
gtgtaccgcgcgggcgatgtgatcccgaaaattgccgatgtcgatttgtccaagcgccca
gaggtcacgaccccgttcgagatgcccgtgagctgtcctgaatgcggatcagatgccatt
cgcgaagagggcgacgcggtgcggcggtgttctggtggcatgatttgtcccgcgcaagcg
gttgaaaagctaaagcatttcgtatctcgcggcgcgtttgatatcgaggggcttggtgcc
aaacaggtcgagcaattctaccatgacggatgggtgcgcgaacccgccgatattttcacc
ctgcgcgaccgttttgggtcgggcttgcagcagctcaaaaaccgcgaaggctggggcgcg
aaatctgccgccaacctgttcgatgcgattgacgagaaacgcacgatccctctggcgaaa
ctgatctttgctcttggcattcgtcatgtgggtgaaaattccgccacgcttttggccaca
tcgtacggcgcgtgggacacattcgaggcggcgatgacccacgcggaattggggcgcggt
gcggcatgggccgagttgttggacatagacggagtgggcgcggtgatggccggatcgctt
gtggcggcgtttcatcaggagcgtgaacgcgcctcaatcgaccgtctcgtggcgcatttg
agcgtgatcaatgccgagagccccacatctgacagccccgtaagtggcaaaacggtcgtg
tttacaggcagtttagagaaaatgacccgtgccgaggccaaggcgcgcgcggaatccctt
ggggcgaaagtcgcaggctctgtgtccaaaaagaccgacttgctcgtcgcgggaccgggg
gcgggatcgaaagagaaaaaggcggcggagttaggcgttgcaacactggacgaggacggt
tggctcgcgctgatcggtgacgcatga
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integrated database retrieval system
