Corynebacterium massiliense: CMASS_04565
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Entry
CMASS_04565 CDS
T08886
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmas
Corynebacterium massiliense
Pathway
cmas03030
DNA replication
cmas03410
Base excision repair
cmas03420
Nucleotide excision repair
cmas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMASS_04565 (ligA)
03410 Base excision repair
CMASS_04565 (ligA)
03420 Nucleotide excision repair
CMASS_04565 (ligA)
03430 Mismatch repair
CMASS_04565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmas03032
]
CMASS_04565 (ligA)
03400 DNA repair and recombination proteins [BR:
cmas03400
]
CMASS_04565 (ligA)
Enzymes [BR:
cmas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CMASS_04565 (ligA)
DNA replication proteins [BR:
cmas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CMASS_04565 (ligA)
DNA repair and recombination proteins [BR:
cmas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CMASS_04565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CMASS_04565 (ligA)
MMR (mismatch excision repair)
DNA ligase
CMASS_04565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CMASS_04565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WCZ32363
LinkDB
All DBs
Position
963811..965907
Genome browser
AA seq
698 aa
AA seq
DB search
MGLAPWARPARDILDWCAVTSAETSNPQKEWNELAQEVRRHRELYYNGEPVIPDADFDKL
FQRLLQLEDEHPELAVPDSPTRQVGAAPQENSSFADVEHLQRMTSLDNVFSAGELQNWLD
RTPADAYLTELKIDGLSIDLVYRDGRLERAATRGDGRVGEDITVNAKVIEDIPHELSGSD
EYPVPELVEVCGEVYMRPEDFEDINAERVAAGKDPFANPRNSAAGGLRMKDPADVKKRRL
RMVCHGIGAREGFTPASQHDAYLALEAWGLPVSPYTERVTSAKEVQEKVEYWADHRHDAV
FEMDGLVVKVDDLASQRSLGATARAPRWAIAYKYPPEEVTTKLLDIEASVGRTGRVTPFA
IMEPVRVSGSTVSMATLHNQSEVKRKGVLVGDTVVIRKAGEIIPEVLGPVVEKRDGTEKE
WVFPKECPSCGSTLAPQKEGDADWRCPNTRSCPAQLGARLEYIAGRGAFDIEALGEKGAR
DLINSGVLEDESGLFDLTTEDLEKSQAYTTKKGTVNAAGKKLLDNLDTAKDTDLWRVLVA
LSIRYVGPTAAQAIATRYGSLAAAREADLNHLAETEGVGKVIAESFHEWFQVDWHRNIVD
RWEKAGVRMEVDASSRPEQTLEGVTVVVTGTLENFSRDEAKEAIVTRGGKATGSVSKKTD
YVVVGDNAGSKEQKARDLGITILNEEQFATLLETGTAG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgggactagcgccgtgggcacgtcccgcgcgcgacattctagactggtgcgctgtgact
agcgctgaaacttcgaacccgcagaaagaatggaatgagctggcgcaggaggtgcgccgc
caccgcgagctgtactacaacggcgagccggtgattccagacgccgacttcgataagctc
tttcagcgtctgctccagctggaagacgagcaccccgaactagcggtaccggatagcccc
acccggcaggtgggtgctgcaccgcaggaaaactcgtctttcgccgacgtcgagcacctg
cagcgcatgaccagcttggacaacgtcttttccgccggagagctgcagaactggctggac
cgcacgccggccgatgcctacctcaccgagctgaagatcgatggcctgtccatcgacttg
gtctaccgcgacggccgcctagagcgcgccgccacgcgtggcgatggccgcgtgggcgag
gacatcaccgtcaacgcgaaggtcatcgaggacatcccgcatgagctttctggaagcgac
gagtatccagtgccggagctggtggaggtgtgcggcgaggtctacatgcggcccgaagat
ttcgaggacatcaacgccgagcgcgtggccgccggcaaagacccgtttgcgaacccacgc
aattccgccgctggcgggctgcggatgaaggacccggcggacgtgaaaaagcggcgcctg
cgcatggtctgccacggcatcggcgcccgcgagggctttaccccggcgagccagcacgac
gcctacctcgcactcgaggcgtggggcctgccggtctcgccgtataccgaacgggtcacc
tccgcgaaagaggtgcaagaaaaggtcgagtactgggcggatcaccggcacgacgccgtc
ttcgagatggacggcctggtggtcaaggtcgatgatctcgcctcccagcgttctttgggc
gcgactgcccgcgcgccgcggtgggccattgcgtacaagtacccgccggaggaagtgacc
acgaagcttctcgatattgaggcgagcgtcggccgcaccgggcgcgtgacgccgtttgcc
atcatggagccggtgcgcgtgtccggctcgacagtgtcgatggccacgctgcacaaccag
tccgaggtcaaacgcaagggcgttctcgtcggcgacactgtggtcatccgcaaggccggc
gaaatcatcccggaggtgctcgggccggtggtggaaaagcgcgacgggacggagaaggaa
tgggtgtttccgaaagaatgtccgtcgtgtggcagcacgctcgcgccgcaaaaggaaggc
gacgccgactggcgctgcccgaacacccgcagctgcccggcgcagctcggcgcccggctg
gaatacatcgccggtcgcggggccttcgacatcgaggcgctaggggagaagggcgctcgc
gaccttattaactcgggcgtattggaagacgagtccggcctgttcgatctaactactgag
gacttggagaagtcccaggcatatacgaccaaaaagggaacggtcaacgccgccggcaag
aagcttttggacaacctcgacacggccaaggacaccgacctgtggcgggtgctcgtcgcg
ctgtctatccgttacgtcggaccgacggcggcccaggccatcgccacgcgctacggctcc
ctggccgccgcgcgagaggcggacttgaaccacctcgctgaaacggagggcgtgggcaag
gtcatcgccgagtctttccacgagtggttccaggtggattggcaccgcaacatcgtggac
cgctgggaaaaggcaggcgtgcgtatggaggtcgacgccagctcgcgtccagagcaaacc
ctcgagggggttacggtcgtcgtgaccggcacgctggagaatttctcgcgggacgaggca
aaggaggccatcgtcacgcgcggcggcaaggccaccggatccgtatcgaagaagacggat
tacgtcgtcgtcggcgacaacgccggctccaaggagcagaaagcgcgcgacttgggcatc
acaatcctcaacgaggagcagtttgcaacgctgctggagacggggactgcgggctag
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