Corynebacterium matruchotii: HBA49_12115
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Entry
HBA49_12115 CDS
T07153
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmat
Corynebacterium matruchotii
Pathway
cmat03030
DNA replication
cmat03410
Base excision repair
cmat03420
Nucleotide excision repair
cmat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HBA49_12115 (ligA)
03410 Base excision repair
HBA49_12115 (ligA)
03420 Nucleotide excision repair
HBA49_12115 (ligA)
03430 Mismatch repair
HBA49_12115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmat03032
]
HBA49_12115 (ligA)
03400 DNA repair and recombination proteins [BR:
cmat03400
]
HBA49_12115 (ligA)
Enzymes [BR:
cmat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HBA49_12115 (ligA)
DNA replication proteins [BR:
cmat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HBA49_12115 (ligA)
DNA repair and recombination proteins [BR:
cmat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HBA49_12115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBA49_12115 (ligA)
MMR (mismatch excision repair)
DNA ligase
HBA49_12115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HBA49_12115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
QIP46167
LinkDB
All DBs
Position
complement(1568975..1571101)
Genome browser
AA seq
708 aa
AA seq
DB search
MTNTPAETTDTQEIHQEWQRLASEVTRHRELYYNQTPEITDAEFDALFKKLEALEADHPE
LATPDSPTQQVGAPVESSFENVEHLERMLSLDNVFDEEELDEWLQRVDAPEYVTELKIDG
LSLALVYRNGVLERAATRGDGRIGEDVTENAKVIQDVPHTLTATEEFPIPDLLEVRGEVF
IAVEDFAEVNEQRQKDGGKPFANPRNAAAGSLRQKDVEAVRRRKLRMLCHGIGATEGFTP
ASQYHAYEALAAWGLPVSDYTKLVKTIDEVHKQVAYWEKHRGDAVCEMDGLVVKVDSIAE
QRQLGATSRAPRWAIAYKYPPEEVQTKLLDIHEGVGRTGRVTPYAVMEPVSVAGSIVELA
TLHNQTEVKRKGVLIGDTVVIRKAGEIIPEVLGPVVERRDGTEREYVFPENCPSCGTKLA
PQREGDVDWRCPNSQKCPAQVAARIKYLADRGRFDIEALGEKAAEDLVRSGVLVDEGGLF
NLTEADLLRTSIYTTKKGTLNATGKKLLKNLETAKHTDLWRVMASLSIRMVGNTASRALA
SRYRSLDALRAATVEDIAETEGVGLVMAQSFKDWFEVQWHCDIVDQWAKSGVTVEDDASD
RPEQVLAGLTVVVTGSLEGFTRDSAKEAIISRGGKASGSVSKKTDYVVVGEKAGSKEQKA
RDLGLTILDEAGFVQLLATGTVEAADDADDANDLDAAEATEVADAADE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgactaataccccagcagaaacgacggatacgcaggaaattcaccaggaatggcagcgt
cttgcctccgaggtgacccggcaccgggagctctattacaatcaaactcccgaaatcact
gatgcggaatttgatgcattattcaaaaagttagaggcattagaggcggatcacccggag
ctcgccaccccggatagccccacccagcaagttggtgccccggtcgaatcatcgttcgag
aatgtggagcacctggaacgcatgctcagtctcgataacgtattcgacgaggaggagctc
gacgagtggttgcagcgggtcgacgccccggagtacgtgaccgaactcaagattgacggc
ctgtcgttggccctcgtgtatcgtaacggggtgctggaacgcgcagccacccgcggcgat
ggacgcatcggcgaagatgtgaccgaaaacgccaaggtcatccaggatgtgccgcataca
cttaccgccaccgaggagtttcccattcccgacctgttagaggtgcgcggtgaggtgttt
atcgcagtggaggatttcgccgaggtcaacgagcaacgccagaaggatggcggtaagccc
tttgctaacccccgtaatgccgcggcgggctcgctgcgtcaaaaagacgtggaggccgtg
cgccgccggaaactgcgcatgctctgccacggcattggggccaccgaagggttcaccccc
gcatcccaataccatgcctacgaggcgttggccgcgtggggcctgcccgtgagcgactac
accaagctggtgaaaaccattgacgaggtgcataagcaggtcgcctactgggagaagcat
cggggcgatgcggtgtgcgaaatggatggcctggtggtgaaggtggacagcattgccgag
cagcggcaactcggcgccacctcccgggcgccccgttgggccattgcctacaaatatccg
ccagaggaggtccaaaccaagctgctggacattcacgagggcgtgggtcgtaccggacgg
gtcacgccgtacgcggtcatggaaccggtgtcggtggccggcagtattgtggagctcgcc
accctgcacaatcaaaccgaggtgaaacgcaaaggtgtgctcattggcgacaccgtggtg
atccgcaaggccggggagatcatccccgaggtgttgggtccggtcgtggagcgccgcgac
ggcaccgaacgcgaatacgtgttccccgaaaactgccccagctgcggcaccaagctcgcc
ccccagcgggaaggggacgtggactggcggtgccctaactcgcagaaatgcccggcgcag
gtggccgcccgcatcaaatacctggctgatcggggccggttcgacattgaggcgttgggg
gagaaggctgctgaagacctggtgcgttccggggtgctggtggatgagggaggactgttc
aatctgaccgaggcggacctattgcgcaccagcatttacacgacgaagaagggcacgctc
aacgccaccggcaaaaaactgttgaagaatttagagaccgccaagcacacggatttatgg
cgggtgatggcctcgttgtccatccgcatggtgggcaacaccgcttcccgggcgttagcg
tcccggtaccggagtctcgatgcgctgcgggcggccacggtggaagacattgccgaaacc
gagggggtgggcctggtcatggcgcaaagcttcaaggactggtttgaggtccagtggcat
tgcgacattgtggaccagtgggcgaaaagcggcgtcaccgtggaggacgatgcctcggat
cggccggagcaggtgctggctggcctgaccgtggtggtgaccggcagcctggagggcttc
acccgcgattccgccaaggaggccattatttcccggggtggcaaggcctccgggtcggtg
tcaaagaaaaccgactatgtggtggtgggggagaaggccggttcgaaggaacagaaagcc
cgcgatctggggctcacgatcctggacgaggccgggttcgtccagttgcttgcgaccggc
accgtggaggccgccgacgatgcggatgacgcgaatgaccttgatgccgccgaagctacc
gaggttgccgacgccgccgacgaataa
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