Chitinibacter mangrovi: ABHF33_14465
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Entry
ABHF33_14465 CDS
T11125
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmav Chitinibacter mangrovi
Pathway
cmav03030
DNA replication
cmav03410
Base excision repair
cmav03420
Nucleotide excision repair
cmav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABHF33_14465 (ligA)
03410 Base excision repair
ABHF33_14465 (ligA)
03420 Nucleotide excision repair
ABHF33_14465 (ligA)
03430 Mismatch repair
ABHF33_14465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmav03032
]
ABHF33_14465 (ligA)
03400 DNA repair and recombination proteins [BR:
cmav03400
]
ABHF33_14465 (ligA)
Enzymes [BR:
cmav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABHF33_14465 (ligA)
DNA replication proteins [BR:
cmav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABHF33_14465 (ligA)
DNA repair and recombination proteins [BR:
cmav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABHF33_14465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABHF33_14465 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABHF33_14465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABHF33_14465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
Zn_ribbon_NUD
Zn_ribbon_RRN7
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
XBM00242
UniProt:
A0AAU7F6T7
LinkDB
All DBs
Position
3060442..3062919
Genome browser
AA seq
825 aa
AA seq
DB search
MTDLALQAATLREQLNRYAHEYYVLDASSVPDAEYDRLFRELQAIEQADPELLSPDSPTL
RVGGKPLPQFAPVTHVVPMLSIRTETDVSEQGALAFDASVRKELGLSAADPAIEYAAELK
FDGLAINLRYENGVLVQAATRGDGATGEDVTQNIRTIGQIPLRLRSAVEYIHAPALVPPF
NEGGLGGISAPLAEFPAVLEVRGEVYMRRDDFEALNARQISQGEKTFVNPRNTAAGAVRQ
LDPNIAAQRPLSFYGYGLGEVAGWDAQPDTHSGILDALAQFGFPVCDVRAVLKGGAGLAE
FHAKVAALRETLPFDIDGVVYKVNSLALQSELGFRTREPRWAVAHKYPAQEALTVVEAID
IQVGRTGSLTPVARLAPVFVGGVTVTNATLHNQDEIDRKDVRVGDTVVVRRAGDVIPEVV
SVVLERRPMQAVPGGDLFSPAQTPQYPAYRILELHPVCPVCGSKTVREPDEARVRCTGGL
FCSAQRKEALKHFAGRRMMDIDGLGERHIDELVEHDFVRNPADLYRLTLADFLEMKRLAD
ERDGTVPETVKAGQVTTKWAENLLAAIEASRKPPLARLIFALGIRHVGESTAKTLADYLG
SLAKIQQAPAAILRLLPDIGATVAVAIADFFAEEHNRTVIAQLLSCGVEPQGEHAPHPAL
RERLSLPAILAALDIPKLTLTRATQLCTSLDKLADVHEFSLGRLQDAGLPLEVAQSLHGW
LAANPGVLAQLDQLRLDWLAQIPADSAAEQGVFAGKTLVLTGTLPTLGRDEAKALIEAAG
GKVSGSVSKKTNFVVAGEAAGSKLDKAQELGIAVLDEAQLLALLG
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatttagctttgcaagccgccacattgcgcgaacaactcaatcgctatgcgcat
gaatactatgtgctcgatgcgtccagtgtgcccgatgccgagtacgatcgcctgtttcgc
gagctgcaggccatcgagcaggcggatcctgagctgttaagtccggattcgcccaccttg
cgcgtaggtggtaaaccgctgccgcagtttgcgccagtgacgcatgtggtgccgatgttg
tcgattcgcaccgagacggatgtgagcgagcagggggctttggcatttgatgccagcgtg
cgcaaagagctgggtttgtctgccgccgatccggcgattgagtacgctgccgagctgaaa
tttgatggcttggcaattaatctacgctatgaaaatggcgtgctggtgcaggccgcaacg
cggggcgatggtgcaacaggcgaagatgtaacgcagaatatccgcaccattgggcagatt
ccgttgcgcctgcgttctgctgttgaatatattcatgcccctgctttagttccccccttc
aacgaaggggggctaggggggatttctgcgccattggcagaatttcccgctgtgctcgaa
gtgcgtggcgaagtgtatatgcggcgtgatgatttcgaggcgctcaatgcgcgccagatc
agtcaaggtgaaaaaaccttcgttaatccgcgcaacaccgccgccggtgcggtgcgccag
ctggatccgaatatcgccgcgcagcgtccgctgtctttctatgggtatggtcttggcgag
gttgctggatgggatgcgcagcccgatacccattcgggtattctcgatgcactggcacaa
tttggttttccggtttgcgatgtgcgtgcggtgttgaaaggtggtgcgggtttagccgag
ttccatgccaaggtggccgcgctgcgcgagacgctgccgtttgatattgatggcgtggtt
tataaggtcaattcgctggcgcttcagtccgagctagggttcagaacgcgcgagccgcgc
tgggcggtggcgcataaatacccggcgcaagaggcactgaccgtggttgaggcaattgac
attcaggtcgggcgtaccggctcgctcacgccagtcgcacgacttgcgccggtcttcgtc
ggtggcgtcacggtcaccaatgccaccctgcacaatcaggatgaaatagatcgcaaagat
gttcgcgtcggcgataccgtcgttgttcgtcgtgcaggcgatgtgattcccgaagtggtt
tcggtggtgctcgagcgccgcccgatgcaggccgttcccgggggtgatctgttctcgcca
gcgcagacgccgcaatatccggcgtaccggattctggagttgcacccggtttgcccggta
tgcggatcaaaaaccgtgcgcgagcccgatgaggcacgcgtgcgctgcactggcgggctg
ttctgctcggcgcagcgcaaagaagcgctgaagcactttgctggccgccgcatgatggac
atcgacgggctgggggagcgccatatcgacgagctggtcgagcatgattttgtgcgtaat
ccggccgatttataccgcctgacactggctgattttctggaaatgaagcgccttgctgat
gaaagagatggcacggtgccggaaacggtcaaagccgggcaggtgacgacgaaatgggcc
gaaaacctgctggccgcgattgaagcgagccgcaaaccgccgctagcgaggctgatcttt
gcactgggtatccgccatgttggcgaatcgaccgccaaaacattggccgattacctgggc
agcctggccaaaatccagcaagcacctgcggcaatattgcggctgttgcccgatattggg
gcgacagttgccgttgcaattgccgatttttttgctgaggagcacaaccgcacggtgatt
gcccaattgctgagctgtggtgtcgagccgcaaggcgagcacgcgccgcatccggcgctg
cgcgagcgcctgagcctgcctgctattctggcggcgctcgacatccccaagctcacgctg
acacgggccacgcagctgtgtaccagcctggacaaactggccgatgtgcatgagtttagt
ctgggtcgtctgcaggacgctggcttgccgctggaggtggcgcaatcgctgcacggctgg
ctggccgccaaccccggcgtgctggcgcagcttgaccagttgcgtctggattggctggca
caaatcccggctgacagcgccgccgagcagggcgtttttgctgggaaaacgctggtgctg
accggcacgctgcccacgctggggcgggacgaagccaaagcactgattgaagcggcgggg
ggaaaagtttccggtagtgtctcgaaaaaaaccaactttgtggttgcaggtgaggcggcg
ggtagcaagctagataaagcgcaagagctgggcattgcggtgctggatgaggcgcagttg
ctcgctttgctgggctaa
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