Cucurbita maxima (winter squash): 111488216
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Entry
111488216 CDS
T05246
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111488216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111488216
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111488216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
nSTAND3
ORC-CDC6-like
AAA_29
AAA_23
SMC_N
AAA
AAA_28
NACHT
AAA_15
AAA_5
AAA_30
AAA_18
AAA_22
AAA_33
AAA_16
Zeta_toxin
PduV-EutP
AAA_24
AAA_25
SRP54
DUF7428
AAA_14
Arf
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
111488216
NCBI-ProteinID:
XP_022991673
UniProt:
A0A6J1JWZ1
LinkDB
All DBs
Position
Unknown
AA seq
308 aa
AA seq
DB search
MADKEISFRGKEGCEDVDEKSSTGIKVQAMQFSYEIDSPLFVEFNLEIGSGSRCLLVGAN
GSGKTTLLKILAGKHMVGGRDVVRVLNSSAFHDTHLVCSGDLAYLGGSWSKTVSSAGEVA
LQGDFSAEHMIFGVEGTDPERRDRLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKV
LLLDEVTVDLDVVARMDLLDFLKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELRK
SEKLSEVDELKHCANLLSVVETWLRAETKLEKKKKKKNPILPPSNTQKNVSPFGSSPFSS
SRHMAYYR
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaggaaatttcgttccgcgggaaagagggttgtgaagatgtagatgaaaag
agttctaccggcatcaaggtgcaagcgatgcaattttcttacgaaattgattcgcctctt
ttcgtggagtttaatctcgagattggctctggatctcgttgtcttctcgttggcgctaat
ggatctgggaagactactttgctgaaaattttggctggaaaacatatggttggagggaga
gatgtggttcgggttctaaatagttcagcttttcatgacactcacctcgtatgtagtggt
gatttagcctacttgggaggatcttggagtaaaaccgttagctctgcaggcgaggttgca
ttacagggggacttttctgctgaacatatgatatttggagttgaaggaacggatcctgaa
aggagagataggttgatcgacctccttgatatagatctccaatggcgaatgcataaggta
tctgatgggcaacgtcgtcgggtgcaaatctgcatgggcctcttacatcctttcaaggtt
ctcttgctagatgaggtcacagttgaccttgatgtcgttgcgaggatggaccttctggac
ttcttaaaggaagagtgtgatcagagaggagctactattgtatatgcaactcacatattt
gatggactggagacatgggcaactcatctggcatatattcaagatggtgagctaagaaag
tcagagaagctgtctgaagttgatgagttgaagcattgtgccaatttgctttctgtggtt
gagacttggctgcgtgctgaaaccaaactcgagaagaagaagaagaagaagaacccaatt
ctccctccatccaacacgcagaagaacgtttctccttttggttcgtctcctttctcgtct
tccagacatatggcttattatcgctag
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