Cucurbita maxima (winter squash): 111493680
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Entry
111493680 CDS
T05246
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
111493680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111493680
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111493680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
111493680
NCBI-ProteinID:
XP_022999254
UniProt:
A0A6J1KGI7
LinkDB
All DBs
Position
Unknown
AA seq
966 aa
AA seq
DB search
MGVPAFYRWLADRYPRSIADVVEEEPVDGPNGVVLPIDVSKPNPNGMEFDNLYLDMNGII
HPCFHPEGKPPPATYDDVFKSIFDYIDHLFSLVRPRKVLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKAFEADGQSLLPMEKPETCDSNVITPGTQFMAVLSVALQYYAH
SRLNHNPGWRFTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEIHFSILREVIMLPGQQEKCFNCGKVGHFAAECRGKSDGPEDWNAADETPIHKKK
YQFLNIWVLREYLQYELDIPNPPFEVDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAI
NLLMHIYRKEFPAMGGYLTDAGEVMLDKVEHFIQAVSVHEEQIFQKRARIQQAQENNEEM
RGRARRENGPAPPVPTIDKIKLGEPGYKERYYAEKFNANSENIAEIKQDVVLKYVEGLCW
VCRYYYSGVCSWQWYYPYHYSPFASDLENLADLEITFFIGEPFKPFDQLMGTLPAASSTA
LPEKYRNLMTDHSSPILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLESSL
TDEEKNRNSVMLDLLYTHCAHPLSAQVFSYYQVASQLPPRERTCWVIDTNASGGMNGYLW
LCERNVFRNVFPSPISSLPDIQHNQVLNVTYLNPQKHEHIPRPPKGVIIPKKVLSSLDIK
PFPTLWHEDNNSRRYHGRERPQVPRAIAGPLLGEAAHRLVKNTLNIKPNGGSLSGLFDQP
YSRNFPGQPIFSRPRQVASSGYETGYGEDPNYSYGHYNNYQGASGRPRYPNSSNGMPGDR
QISRGNDRVQHQERYNNVRTGMSALTIEESMRNRSLDMLTPGLSPVMMPKMLNVGNSANQ
QNFAQATDALPSPPHKWINRAPTPSANIMYARQQENFTGGANEKQAKQMYLAKTPAFQSG
SGSGSR
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccctgccttttaccggtggcttgccgaccggtacccccggtcgatcgccgat
gtggtcgaggaagagccagttgatggccccaacggggtcgtcttgccgatcgacgtctcc
aagcctaaccctaatggaatggagtttgacaacttgtatttggatatgaatggcataatt
catccgtgctttcatcctgaaggcaagcctccaccagctacatatgacgatgtatttaaa
tccattttcgattacattgaccatctcttctcattggttcggccaagaaaggttctttac
atggcaattgatggtgttgcacctagagctaaaatgaatcagcaacgttctcggcgtttc
agagctgcaaaagatgctgccgaggctgaagctgaagaagaaagattaagaaaagcgttt
gaagctgatgggcaaagcttattacctatggagaagcccgaaacatgtgactctaatgtc
atcactcccggaactcaatttatggcagtgctctccgtagcacttcagtattatgcgcat
tcaagattaaatcacaacccagggtggaggtttacgaaggttattctatctgattcaaat
gttcctggcgagggagagcacaaaattatgtcatacattcggctacaacgcaatttgcct
ggttttgatccaaacactcgacattgtctgtacggtctggatgcagatctgattatgctt
agtctagcaacacacgagattcacttttcaattttaagagaggtaataatgctaccaggg
caacaggaaaaatgtttcaattgtggcaaagttggtcattttgcagctgagtgtcgtgga
aagtctgatggtccagaagattggaatgcagccgatgaaactccaattcataaaaagaaa
tatcagtttctcaacatttgggttttacgagaatacttgcagtatgaattggacattccc
aatccaccttttgaggttgatttcgagcggatagtggatgattttgtgtttttgtgtttc
tttgttggcaacgattttcttccacatatgccaaccttggagataagagagggtgctatt
aatttgctgatgcacatatatagaaaggagtttcctgctatgggtggttatcttactgac
gcgggtgaggttatgttagataaagtggagcattttatccaagctgtatctgtacacgaa
gaacaaatctttcaaaaaagagcccgaattcagcaggcacaagagaataatgaagaaatg
agaggtagagctagaagagagaatggtcctgcgcccccagttccaacaattgacaagatc
aagttaggggagcctggatacaaggagaggtattatgctgagaagttcaatgctaactca
gaaaacattgctgaaataaaacaagatgtggtcttgaagtatgtggagggtttatgttgg
gtctgtcgatattactattcaggggtttgctcttggcaatggtattatccttatcattat
tcaccttttgcctctgaccttgaaaacttggctgatttggagataacctttttcatcgga
gagccatttaaaccttttgatcaactgatgggaacgctaccagctgcaagttcaaccgct
cttcctgagaaatacagaaacttgatgacagatcattcatcgccaatccttgaattttat
ccttcagattttgagattgacatgaatggaaagcgttttcaatggcagggtgttgccaaa
ttgcctttcatcgacgagagaaagttgcttgctcaaactaggagacttgaaagctcttta
acggatgaagagaagaatcggaatagtgtgatgcttgatttgctttatacacattgtgcc
catccactgtctgcacaggttttctcttattaccaagttgctagtcaactacctccacgt
gaaagaacttgttgggtgattgacacgaatgccagtggtgggatgaatggatacctctgg
ttgtgtgagagaaatgtattccgtaatgtttttccatcaccaatcagtagtttgccagat
atccagcataatcaagtcctgaatgtaacctatcttaatcctcagaagcatgaacatatc
cctagacctccaaagggtgtaatcattcccaaaaaggttctaagttccttggatatcaaa
cctttccctaccttatggcatgaagacaataattcccggcgctatcatggcagagaacgg
cctcaagtacctagagctattgctggccctcttttgggagaagcagctcatcgtcttgtg
aaaaacactcttaatatcaaacctaatggtggctcattgtcgggattatttgatcaaccc
tattctcgcaatttcccgggacagcctatattctctcggccgcgacaagttgcatcttca
ggttatgaaacggggtatggtgaagatccaaattattcctacgggcactataataactac
cagggtgcatcaggtaggccaagatatcccaattcttcaaatggtatgccaggtgacagg
caaatttcccgtggaaatgatagagtacagcatcaggagcgatacaacaatgtgaggact
ggtatgtctgctttgacaattgaagagagcatgaggaatcgatctcttgacatgttaact
cctggtctttctcccgtgatgatgccaaagatgctgaatgtcggaaactcggcaaaccaa
cagaattttgcccaggctactgacgctcttccttcaccaccacacaaatggatcaataga
gcgccaacgccatctgcaaatataatgtatgcaagacaacaagaaaattttacaggagga
gccaacgagaagcaagcgaaacaaatgtatctagcaaagactccagcattccagagtggg
tcaggttctggaagcaggtag
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