Cucurbita maxima (winter squash): 111493710
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Entry
111493710 CDS
T05246
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111493710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmax03041
]
111493710
Spliceosome [BR:
cmax03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111493710
Complex C
U5 SnRNP specific factors
111493710
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
EF-G_D2
Septin
SOI
Ras
Motif
Other DBs
NCBI-GeneID:
111493710
NCBI-ProteinID:
XP_022999292
UniProt:
A0A6J1KJ78
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIDSDKDSDIEDEDEDLMEKPDDDEGASDDEDAGGASNGWITTSN
DVDMDNQIVLAEDKKYYPTAEEVYGDDVETLVMDEDELPLEQPIIKPVRNIKFEVGVKDS
STYVSNQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLVEQTHHMSTFDIKGEKHLRYT
DTRIDEQERGISIKAVPMSLVLEDGNSKSYLCNIMDTPGHTNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAMRHAIQERLPIVVVINKVDKLITELKLPPRDAYYKLRHTLEVINNY
ISAASSTAGNVQVIDPAAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWG
DYYFHSDTRGFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHRKSVETTLSELGVTLSN
AAYKLNVRPLLRLACSSVFGGASGFTDMLVQHIPSPRDSSSRKVDHIYTGPKDSVIYKAM
KECDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPEDEEDMTVK
EVTKLWLYQARDRIPIAEAPPGSWVLIEGVDASIMKTATLSNVDYDEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENSVV
SLDWSRKKLGDFFQTKYEWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKNLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSSFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVAQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMMVELAQQAADLHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagcttgtatgatgagtttgggaactacatagggccagaaattgattctgac
aaggatagtgacatagaagatgaagatgaagaccttatggagaagccggacgatgatgaa
ggtgcatcagatgatgaagatgcaggtggtgcttcaaatggttggattacgacgtctaat
gacgtcgatatggacaaccagattgtccttgctgaggacaaaaagtattatccaactgca
gaagaggtttatggtgatgatgttgaaacattggttatggatgaagatgaactaccactt
gagcaaccaatcattaagcctgttagaaatataaagtttgaggttggggtaaaagattct
agcacttacgtttcaaaccaatttctggtgggtctcatgtccaatccaacattggttcgc
aatgttgcacttgtaggccacttgcatcatggaaagacagttttcatggatatgttggtt
gagcaaactcatcacatgtcaacatttgatattaaaggagagaaacatctgaggtacaca
gatacaaggattgacgagcaggagagaggaatatcaattaaagcagttcctatgtcacta
gtcctcgaggacggcaattcaaaatcatacctttgcaatataatggacacccctggccat
accaatttttctgatgaaatgactgctgctcttagactggctgatggtgcagtgttgatt
gtcgatgctgctgaaggagttatggtcaatacagagagggctatgcgccatgcaattcag
gagcgattgcccattgttgttgtaattaacaaggttgacaagctgattacagaactcaaa
ttgcccccaagggatgcatactataaattaaggcatacgttagaagttattaataactat
atatctgctgcctcatctactgctggaaatgtccaagtcattgacccagcagctggaaac
gtgtgttttgctagtgctactgcaggatggtcatttactttgcaatcatttgcaaagtta
tatgtcaaacttcatggaatcccttttgatgctgataagtttgcatctcgtctttgggga
gactactattttcattctgataccagaggattcaagaaaaaaccacctgcaagtggaggg
gaaaggtcatttgtccaatttgtgctagagccactatacaaaatatatagtcaagtcatt
ggtgaacataggaaaagtgttgagactactctttcagagcttggtgttactcttagcaat
gcagcttacaagttgaatgtcaggcctttgctgagactggcttgtagttcagtttttggt
ggagcttcaggattcactgacatgcttgttcagcacataccttctcccagggattcttct
tctcggaaggttgatcatatttatactgggcctaaagactctgtgatatacaaagcaatg
aaggaatgtgatccttctgggcctttaatggtcaatgtcaccaagctatatcccaagtca
gactgcagtgtctttgatgcatttggtagggtttatagtggtaagattcaaacggggcag
actgttcgggtattgggtgaaggctattcaccagaggatgaggaagatatgacagtgaag
gaagtaacaaaattatggctttatcaagctcgagacaggattcccattgctgaggctcct
cctggatcttgggttctcattgagggagtggatgcatctattatgaaaactgcaactctg
tctaatgtagattacgatgaggacgtttacatattccgaccacttcaattcaataccctt
cctgtggtgaaaacagctacagagcctctaaatccaagtgagttaccaaagatggtagag
ggtcttcggaagatcagcaaaagttatcctctggcaataactaaagttgaggaatcaggt
gagcataccattttaggcacaggagagctgtacttggattcaattatgaaggatcttaga
gaactctattcggaagtagaggtcaaggtagccgatccggtcgtctcattttgtgaaaca
gttgtagagtcttcttcgatgaaatgttttgctgagactcctaacaagaagaataaaata
accatgatcgcagagccattggagagaggacttgcagaagacattgagaatagtgtagta
agtcttgattggtcaagaaagaaactcggggatttcttccagacaaaatatgagtgggat
ttgctggctgcaaggtccatatgggcatttggcccagataagcagggacctaacattcta
ttagatgatacgctctcttctgaagtagacaagaatttgctcaatgccgtcaaggattcc
attgttcaagggtttcaatggggggctagagaaggaccactttgtgatgaacccatcaga
aatgtaaagttcaaaatcgttgatgcaagaattgcacctgagccattgcatcgtgggtct
ggtcagatcattcccacagctcgacgtgtggcctattcgtcttttcttatggcaacccca
cgacttatggaaccagtatactatgttgagatacaaacaccaattgattgtgtctctgca
atctatactgtcctatcccgaaggcgtggacatgttacagctgatgttgctcaaccaggg
actccagcttacatcgtcaaggcatttttacctgttatagaatcttttggctttgaaacg
gacttgcggtatcacacacaaggccaagctttttgtctctccgtgtttgaccattgggcc
atcgttcctggtgatccccttgataagagcattgttttgcggcctcttgagccagcacca
atacagcaccttgctcgtgaattcatggtgaagacaagacgtagaaagggaatgagcgag
gatgtgagcataaacaagttcttcgatgaggccatgatggtcgagctggctcagcaagca
gccgatcttcatcaacaaatgatataa
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