Clavibacter nebraskensis: CMN_01376
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Entry
CMN_01376 CDS
T02530
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc03030
DNA replication
cmc03410
Base excision repair
cmc03420
Nucleotide excision repair
cmc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMN_01376 (ligA)
03410 Base excision repair
CMN_01376 (ligA)
03420 Nucleotide excision repair
CMN_01376 (ligA)
03430 Mismatch repair
CMN_01376 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmc03032
]
CMN_01376 (ligA)
03400 DNA repair and recombination proteins [BR:
cmc03400
]
CMN_01376 (ligA)
Enzymes [BR:
cmc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CMN_01376 (ligA)
DNA replication proteins [BR:
cmc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CMN_01376 (ligA)
DNA repair and recombination proteins [BR:
cmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CMN_01376 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CMN_01376 (ligA)
MMR (mismatch excision repair)
DNA ligase
CMN_01376 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CMN_01376 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
CCE75327
UniProt:
A0AAI8ZHC8
LinkDB
All DBs
Position
1427903..1430395
Genome browser
AA seq
830 aa
AA seq
DB search
MSDTATASPAADDAVPATTPADLEAASARVDALRTEIERHRDEYYSANASTLSDADYDAL
VHELEALEEAHPALRSQDSPTQTVGGRAETTLFAPVIHAERMLSLDNVFSEEELAEWAAK
VERDAGSGRVRYLSELKIDGLAINLRYEHGVLVTAATRGDGVVGEDVTQNVLTMGTVPER
LAGSGHPPLVEVRGEIFFPVAEFDELNARQLEVGERVFANPRNAAAGSLRQKEEGKSPAR
LELMHARMRRLRMLVHGIGAWPVRELERDAHVSAQSEVYGLLADWGLPISTHFRVFDDIA
DVTAFVRRHGAHRAEVEHQIDGIVVKVDDLGLHEELGATSRAPRWATAYKYPPEEVNTTL
LDIVVSVGRTGRATPFAVMEKVEVAGSEVRQATLHNQQVVKAKGVLIGDTVVLRKAGDVI
PEVLGPVVELRDGTEREFVMPTLCPECQTPLKPAKEGDIDLRCPNARSCPAQVRGRVEHV
ASRGALDIEGLGEVAAAALTQPLEPEDPPLETEAGLFELTMADLVPITVVVRDAETGMVK
VDEKTGEAKRVTPFRRKRAPKRDGAFDPAAPWGDEDSVPSKSAEVLLENLEKAKTQDLWR
ILVALSIRHVGPVAARALAGWFGSLDAIRSASREELAAVDGVGGIIADALLDWFEVDWHR
EIVERWEKAGVVTAVPGHPGPGAAAAAGGVLAGLTVVATGSLEGYTREGALEAIMAAGGK
AGSSVSKKTHYVAAGPGAGSKLGKAEALGVRIIDAAEFRLLVEQGPEAIALPDADPAPDA
ADADPAPGGGTADGAAPAPKRARKRTTPAEADPATATDAAAEPGDPTITP
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaccgccaccgcatcgcccgccgcggacgacgcggtccccgccaccaccccc
gccgacctcgaggccgcctccgcccgggtcgatgccctccgtaccgagatcgagcgccac
cgcgacgagtactactccgcgaacgcgagcaccctcagcgacgccgactacgacgcgctc
gtgcacgagctcgaggcgctcgaggaggcgcaccccgcgctccgcagccaggacagcccc
acgcagacggtcggcggccgcgcggagaccacgctcttcgcgcccgtcatccacgccgag
cgcatgctcagcctcgacaacgtcttcagcgaggaggagctcgccgagtgggccgccaag
gtcgagcgcgatgccggcagcggccgggtccggtacctgagcgagctcaaaatcgacggg
ctcgccatcaacctccgctacgagcacggcgtgctcgtcacggcggccacccgcggcgac
ggcgtcgtcggtgaggacgtcacgcagaacgtcctcactatgggcaccgtgcccgagcgg
ctcgccggatccgggcacccgcctctcgtcgaggtgcgcggcgagatcttcttccccgtc
gccgagttcgacgagctcaacgcccggcagctggaggtgggggagcgcgtgttcgcgaac
ccgcgcaacgccgccgccggatccctgcgccagaaggaggagggcaagagccccgcgcgc
ctcgagctcatgcacgcgcgcatgcgccgcctccgcatgctcgtgcacggcatcggcgcg
tggcccgtccgggagctcgagcgcgacgcccacgtgtccgcgcagtccgaggtctacggg
ctgctcgccgactggggtctccccatctccacgcacttccgcgtgttcgacgacatcgcc
gacgtcacggcgttcgtgcggcgccacggcgcccaccgcgcggaggtcgagcaccagatc
gacggcatcgtcgtcaaggtcgacgacctcggcctgcacgaggagctcggcgccaccagc
cgcgcgccgcgctgggcgacggcgtacaagtacccgcccgaggaggtcaacacgacgctc
ctcgacatcgtcgtcagcgtcggccggaccggccgcgccacgccgttcgcggtcatggag
aaggtcgaggtcgccggatccgaggtgcgccaggccacgctgcacaaccagcaggtcgtg
aaggccaagggcgtgctcatcggcgatacggtcgtgctgcgcaaggccggcgacgtcatc
cccgaggtgctcggcccggtcgtagagctgcgggacggcacggagcgcgagttcgtcatg
cccacgctctgcccggagtgccaaacgccgctcaagccggccaaggagggcgacatcgac
ctccgctgtccgaacgcgcgcagctgcccggcgcaggtgcgcggtcgcgtcgagcacgtc
gcctcgcgcggggcgctcgacatcgagggcctcggcgaggtcgccgcggccgcgctcacc
cagccgctcgagccggaggatccgccgctcgagaccgaggcgggcctgttcgagctgacg
atggccgacctcgtgcccatcacggtcgtcgtgcgcgacgcggagacgggcatggtgaag
gtcgacgagaagacgggtgaggccaagcgcgtcacgccgttccggcgcaagcgcgcgccg
aagcgcgacggcgccttcgatcccgcggcgccgtggggagacgaggacagcgtcccgtcg
aagtccgccgaggtgctgctcgagaacctggagaaggcgaagacccaggacctgtggcgc
atcctcgtggccctcagcatccggcacgtgggtccggtcgccgcgcgcgcgctggccggc
tggttcggctcgctcgacgcgatccgctccgccagccgcgaggagctcgccgcggtcgac
ggcgtgggcggcatcatcgccgacgcgctcctcgactggttcgaggtcgactggcaccgc
gagatcgtggagcggtgggagaaggcgggcgtcgtcacggccgtccccggccacccgggt
ccgggcgccgcggccgccgcgggcggcgtgctcgcgggcctcacggtcgtggccacgggt
tcgctcgagggctacacccgcgagggcgcgctcgaggccatcatggcggccggcggcaag
gcgggatccagcgtcagcaagaagacgcactacgtcgcggccggacccggcgcgggctcc
aagctcggcaaggcggaggcgctcggcgtgcggatcatcgacgcggccgagttccgcctg
ctcgtggagcaggggcccgaggcgatcgcgctgcccgacgcggatcccgcgccggatgcc
gccgacgcggatcccgcgccgggcggcgggaccgcggatggcgccgctccggcgccgaag
cgcgcccggaagcggacgaccccggccgaggcggatcccgcgaccgcgaccgacgccgcg
gccgagccgggagatcccacgatcaccccctga
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