Corynebacterium maris: B841_05890
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Entry
B841_05890 CDS
T02784
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmd
Corynebacterium maris
Pathway
cmd03030
DNA replication
cmd03410
Base excision repair
cmd03420
Nucleotide excision repair
cmd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B841_05890 (ligA)
03410 Base excision repair
B841_05890 (ligA)
03420 Nucleotide excision repair
B841_05890 (ligA)
03430 Mismatch repair
B841_05890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmd03032
]
B841_05890 (ligA)
03400 DNA repair and recombination proteins [BR:
cmd03400
]
B841_05890 (ligA)
Enzymes [BR:
cmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B841_05890 (ligA)
DNA replication proteins [BR:
cmd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B841_05890 (ligA)
DNA repair and recombination proteins [BR:
cmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B841_05890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B841_05890 (ligA)
MMR (mismatch excision repair)
DNA ligase
B841_05890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B841_05890 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
DUF8512
Motif
Other DBs
NCBI-ProteinID:
AGS34651
UniProt:
S5TID3
LinkDB
All DBs
Position
1256769..1258832
Genome browser
AA seq
687 aa
AA seq
DB search
MTEPNDLTDPTPAAAEPTPEVRGRWDELAQEIRHHRDLYYNGAPEIPDADFDALFQRLLD
LEADYPALAVPDSPTQEVGAPALASSTFDNVEHLERMMSLDNVFSLEEMRDWLARTPATA
YLTELKVDGVSIDLIYRNGALERAATRGDGRIGEDITANARVIDDIPHQLHGDAPELVEI
RGEVFIRPEDFPALNEARIAAGGKPFANPRNTAAGGLRQKNPDDVKKRGLRFIAHGLGAR
EGFAPATQQEAYEAMAAWGLPVSEYTRRVETVDEIIERVEYWERHRHDAIHEMDGLVVKV
DALSEQRGYGATSRAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMTPVFVAGS
TVSMATLHNQTEVARKGVLIGDTVVIRKAGEIIPEVLGPVADKRDGTEREFIFPTLCPSC
GTRLAPQKEGDADWRCPNTRSCPAQLSARLTYLAGRGGFDIEALGEKGAQDLIRTGILTD
ESQLFDLTEEKLTASEVYTTTTGKVNAAGKKLLANLETARTTDLWRVIVALSIRHVGPSA
ARALAARYRSLPELIDAPVEDLAETDGVGGVIAESFKEWFTVEWHRHIVDAWAAAGVTMV
DDAADRAEQTLEGLTVVVTGTLEGFNRDEAKEAILSRGGKASGSVSKKTSYVVAGENAGS
KETKARDLGVPVLDEAGFLHLLETGEA
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagccgaatgatctgaccgaccccacgcccgccgcagccgaaccgacccccgag
gtccgcggccgctgggacgagctggcgcaggaaatccgccaccaccgcgacctgtactac
aacggcgccccggagatccccgacgccgacttcgacgccctctttcagcggctgctggac
ctggaggccgactacccggcgctcgccgtgccggacagccccacccaggaagtcggtgcc
cccgcactggcgagcagcaccttcgacaacgtcgaacacctagaacgcatgatgagcctg
gacaacgtgttcagcctcgaggagatgcgcgactggctggcccgcaccccggccacggcc
tatctgaccgagctgaaggtcgacggcgtctccatcgacctgatctaccgcaacggcgca
ctcgagcgcgcggccactcgcggcgacggacgcatcggcgaggacatcaccgccaacgcg
cgcgtcatcgacgacattccccaccaactgcacggcgacgccccggaactcgtcgaaatc
cgcggcgaagtgttcatccgccccgaggacttcccggcgctgaatgaagcgcgcatcgcc
gccggcggcaaacccttcgccaacccccgcaacaccgccgccggcggcctgcgccagaaa
aaccccgacgacgtgaagaagcgcggcctgcgcttcatcgcccacggcctcggagcccgc
gaaggcttcgcgcccgccacccagcaggaggcctacgaagcaatggcggcctgggggctg
ccggtctccgagtacacgcgccgggtggagaccgtcgacgagatcatcgagcgggtcgag
tactgggagcgccaccgccacgacgccatccatgagatggacggcctggtggtcaaagtc
gacgcgttgtccgaacagcgcggttacggcgcgacctcgcgggccccgcggtgggcgatc
gcgtacaagtacccgccggaggaggtcaccaccgagctgctggacatccaggtcggcgtc
ggccgcaccgggcgggtgaccccgttcgcggtgatgaccccggtcttcgtcgcgggttcg
acggtgtcgatggccacgctgcacaaccagacggaggtcgcgcgcaagggcgtgctcatc
ggcgacaccgtcgtcatccgcaaggccggcgagatcatccctgaggtgctcggtccggtg
gcggacaaacgcgacggcacggaacgcgagttcatcttcccgacgctgtgcccgtcctgc
ggcacgcgcctggcgccgcagaaggagggcgacgccgattggcggtgccccaacacccgc
agctgtccggcgcagctgtccgcgcgtctgacgtatctggccggtcgcggcggcttcgac
atcgaggcgctgggggagaagggcgcccaggacctgatccgtaccggcatcctcaccgac
gaatcgcagctgttcgatctgacggaggagaagctgaccgcctccgaggtctacaccacg
accacgggcaaggtgaacgcggccggcaagaaattgctggcgaacctggagaccgcgcgg
accacggacctgtggcgcgtgatcgtcgcgttgtccatccgccacgtcggtccctccgcg
gcgcgcgcgctggccgcccgctaccggtccttgccggagctcatcgacgcccccgtcgag
gacctggcggagaccgacggggtgggcggggtgatcgccgagagcttcaaggagtggttc
acggtggagtggcaccgacacatcgtcgacgcgtgggccgccgccggcgtgacgatggtc
gacgacgccgccgaccgtgcggaacagaccctggaggggctgaccgtggtggtgacgggc
acgctggagggcttcaacagggatgaggcgaaagaggcgatcctctcccgcggaggcaag
gcctccggttccgtgtcgaaaaagaccagctacgtcgtcgccggggagaacgccgggtca
aaggaaaccaaggcgcgcgacttgggcgtgccggtgttggacgaggcggggttcctgcat
ctgttggagaccggcgaggcctga
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integrated database retrieval system
