Caminibacter mediatlanticus: FE773_05060
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Entry
FE773_05060 CDS
T05985
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmed
Caminibacter mediatlanticus
Pathway
cmed03030
DNA replication
cmed03410
Base excision repair
cmed03420
Nucleotide excision repair
cmed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FE773_05060 (ligA)
03410 Base excision repair
FE773_05060 (ligA)
03420 Nucleotide excision repair
FE773_05060 (ligA)
03430 Mismatch repair
FE773_05060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmed03032
]
FE773_05060 (ligA)
03400 DNA repair and recombination proteins [BR:
cmed03400
]
FE773_05060 (ligA)
Enzymes [BR:
cmed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FE773_05060 (ligA)
DNA replication proteins [BR:
cmed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FE773_05060 (ligA)
DNA repair and recombination proteins [BR:
cmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FE773_05060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FE773_05060 (ligA)
MMR (mismatch excision repair)
DNA ligase
FE773_05060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FE773_05060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
HHH_2
Nlig-Ia
BRCT_2
Histone_H2A_C
Motif
Other DBs
NCBI-ProteinID:
QCT94566
UniProt:
A0AAI9AG47
LinkDB
All DBs
Position
915712..917760
Genome browser
AA seq
682 aa
AA seq
DB search
MIRNHEEYKKAVETLKKWAYYYYVLDNPLVTDEEYDKLYKEVEEYEKNHPDEVDKTSPTQ
RIGDVVLDEFKKAKHITKMWSMEDVFDKNEFIDWVNRVKRAIGNDNFSFYIEPKFDGASL
NLVYKNGELIRAETRGDGEIGEDVTLNAKTIKTIPLTIKYKGLIEIRGEVVIKKQDFDKL
NEERIKKGEPTFANPRNAAAGSLRQLDPKITANRPLLFYPWGVGYPIEVLISDEVSKEEY
ERDKKEFIEKFKTYKNIMDFVYSLGFKEPPKRGECKASDIECVLKKYNEFVEIRDEIPVM
LDGMVVKVNELNLLENLGYTAKYPRWMVAYKFPAIEKETIIEDVIVQVGRTGVLTPVAIL
KPIEIGGVIVERATLHNFDEIERMDIRIGDRVIVIRSGDVIPKITKVLYHKRTGNEKKIP
RPTHCPVCGSEVLDEGAIIKCQNLSCPARVVNTIIYAASKNCLDIEGLGESVAKLLYEKG
LVKDIRDLFKLKVEDLEKLPLFARKKAENLVNAISKVKGIECWRFVNALGIEHIGEVASK
KICEKFGVEFYKHSPEEFYELEGFGPEMVKSIAEYVKVNKDKIEELIKLIEPTNPKKEVV
NSPFTGKTVVLTGSMSKSRSEIKEMLENLGAHVTNSVSKKTDYVIVGEDPGSKFEKAKKL
GITILKEEDMWNMIGDGNGDKK
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgattagaaatcatgaagaatataaaaaagctgttgaaacacttaaaaaatgggcatat
tactattatgtattagataatccattagtaacggatgaagagtatgataaattatataaa
gaagtagaagagtatgaaaaaaaccatcctgatgaagtagataaaacatcacctactcaa
agaataggtgatgttgtattagatgaatttaaaaaagcgaaacatattactaaaatgtgg
tctatggaagatgtttttgataagaatgaatttatagattgggtaaatagagttaaaaga
gcaattgggaatgataatttttctttttatattgaaccaaaatttgatggagcgagttta
aatttagtttataaaaatggagaattaataagggctgaaacaagaggagatggtgaaatt
ggagaagatgttacattaaatgcaaaaacaattaaaacaattcctttaacaattaaatac
aaaggacttattgaaattagaggtgaagttgtaattaaaaagcaagattttgataaatta
aatgaagagagaataaaaaaaggagagccaacatttgcaaatccaagaaatgcagcagca
gggagtttaaggcaactcgaccctaaaattacagcaaatagacctctacttttttatcct
tggggagttggatatccaattgaagtattaataagtgatgaggtaagtaaagaagagtat
gaaagagataaaaaagaatttatagaaaaatttaaaacttataaaaatataatggatttt
gtatattcgctgggatttaaagaaccaccaaaaagaggggaatgcaaagcaagtgatatt
gaatgtgttttaaagaaatataatgaatttgttgaaatcagggatgaaatacctgtaatg
cttgatggaatggttgtaaaggttaatgaacttaatttacttgaaaatcttggatataca
gctaaatacccaagatggatggttgcttataaatttccagctattgaaaaagagacaatt
atagaagatgtaattgtgcaagttggaaggacaggtgttttaactcctgttgctatatta
aaacctattgaaattggaggagttattgtagaaagagctactcttcacaattttgatgaa
atagagagaatggatataagaataggtgatagagtaatagttattagaagtggagatgtg
ataccaaaaattacaaaagttttatatcataaaagaacaggtaatgaaaagaaaatacca
agacctactcattgtcctgtttgtggaagcgaagttttagatgagggagcaataattaaa
tgtcaaaatctctcatgccctgcaagagtagttaatacgataatttatgctgcaagcaag
aattgtttagatattgaagggcttggagagagtgtggcaaaacttttatatgaaaaaggt
ctggtaaaagatattagagatttatttaaattaaaagttgaagatttagaaaaacttcct
ctttttgcaagaaagaaagctgaaaatttagtaaatgcaattagtaaagtcaaaggaatt
gagtgttggagatttgtaaatgcattagggattgagcatattggtgaagttgcaagtaaa
aaaatatgtgagaaatttggagttgagttttataaacatagcccagaagaattttatgaa
ttggaaggatttggaccagaaatggttaaatcaattgctgaatatgttaaagtaaataaa
gataaaattgaagaattaattaaattgattgagccaacaaaccctaaaaaagaggtggtt
aattcaccatttactggtaaaacagtagttttaacaggtagtatgagtaagagtagaagt
gaaataaaagagatgttagaaaatcttggcgctcatgtaacaaatagtgtttctaaaaaa
actgattatgtcattgtaggagaagatcctggaagtaagtttgaaaaagcaaaaaaactt
ggtataactattttaaaagaagaagatatgtggaatatgataggagatggcaatggcgat
aaaaagtga
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