Chenggangzhangella methanolivorans: K6K41_04170
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Entry
K6K41_04170 CDS
T07462
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmet
Chenggangzhangella methanolivorans
Pathway
cmet03030
DNA replication
cmet03410
Base excision repair
cmet03420
Nucleotide excision repair
cmet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6K41_04170 (ligA)
03410 Base excision repair
K6K41_04170 (ligA)
03420 Nucleotide excision repair
K6K41_04170 (ligA)
03430 Mismatch repair
K6K41_04170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmet03032
]
K6K41_04170 (ligA)
03400 DNA repair and recombination proteins [BR:
cmet03400
]
K6K41_04170 (ligA)
Enzymes [BR:
cmet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6K41_04170 (ligA)
DNA replication proteins [BR:
cmet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6K41_04170 (ligA)
DNA repair and recombination proteins [BR:
cmet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6K41_04170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6K41_04170 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6K41_04170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6K41_04170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
DUF6981
DUF4796_N
Zn_ribbon_ISL3
Motif
Other DBs
NCBI-ProteinID:
QZO00861
UniProt:
A0A9E6RG90
LinkDB
All DBs
Position
complement(822406..824529)
Genome browser
AA seq
707 aa
AA seq
DB search
MATTDKDGGELPPSLPDAAAEHAKLADEIRAHDRRYYQDDAPIVSDADYDALRQKLNALE
AAFPDLVTADSPSQTVGAAPSEAFAKVRHAVPMLSLGNAFKDEDVAEFAARIRRFLQMPP
EEALAISAEPKIDGLSASLRYEDGVFVRGATRGDGAVGEDVTQNLRTIADVPERLKGKDV
PAVIEVRGEVYMSHADFRALNERQVEAGKPVFANPRNAAAGSLRQIDPKNTAARPLRFFA
YAWGEASEVPAETQSGMVKNLGRWGFAVNDEMTVCATTDELLAHYRAIEEKRATLGYDID
GVVYKVDRLDLQRRLGFVSRSPRWAIAHKFPAEQATTVLEAIDIQVGRTGSLTPVAKLKP
VTVGGVVVSNATLHNEDEIARKDVRVGDTVVVQRAGDVIPQVVRVTDADRKGRGPAFEFP
HVCPVCGSHAARDEGEVVWRCTGGLTCRAQAVERLRHFVSRGAMDIEGLGEKQIEAFYEW
GEIREPADIFTLEKREKTEGRLTALKNREGWGETSARNLYAAIEAAKSQTVDRLLYGLGI
RHVGETNAKRLMRHFATIDALREAAKAATSPSGERGDKGDEAWREIVDIDGIGAVVAKAV
VEFFREPKNDPPLDALLAEATPSAMEARAESSPVSGLTVVFTGALEKMTRDEAKAMAERL
GAKVSGSVSKKTDLVVAGPGAGSKLEKAKELGIETLTEDEWLARVGE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggccacgacagacaaggacggcggcgaactcccgccctcgctgcccgacgcggccgcc
gaacacgccaagctcgccgacgagatccgcgcgcatgaccggcgctactatcaggacgac
gcgccgatcgtctcggacgccgactacgacgcgcttcgccagaagctgaacgcgctcgag
gccgcgtttcccgacctcgtcacggccgacagcccgagccagaccgtcggcgcggcgccc
tcggaggcgttcgccaaggttcggcatgccgtgccgatgctctcgctcggcaacgccttc
aaggacgaggacgtggcggagttcgccgcccgcatccgccgcttcctgcagatgccgccc
gaggaggcgctcgcgatctcggccgagcccaagatcgacggactctcggcctccctgcgc
tacgaggacggcgtcttcgtccgcggagcgacccgcggcgacggcgccgtgggcgaggac
gtgacgcagaacctgcgcaccatcgcggacgtgcccgaacgcctgaagggcaaggacgtc
cccgcggtgatcgaggtgcgcggcgaggtctacatgtcgcacgccgacttccgtgcgctg
aacgaacggcaggtcgaggccggcaagccggtcttcgccaatccgcgcaacgcggcggcc
gggagcctccggcagatcgatccgaagaacaccgccgcgcggccgctgcgcttcttcgcc
tatgcctggggcgaggcgagcgaggttccggccgagacccagtcgggcatggtgaaaaac
ctcggccgctggggcttcgccgtcaatgacgagatgacggtctgcgcgacgaccgacgag
cttctggcgcattaccgcgcgatcgaggagaagcgcgccacgctcggctacgacatcgac
ggcgtggtctacaaggtggaccggctcgaccttcagcggcggctcggcttcgtgtcgcgc
tcgccccgctgggccatcgcccacaagttcccggccgagcaggcgaccaccgtgctcgag
gcgatcgacatccaggtgggccgcaccggttcgctgacgccggtcgccaagctcaagccc
gttacggtcggcggcgtcgtggtgtcgaacgccacgcttcacaacgaggacgagatcgcc
cgcaaggacgtccgcgtcggcgacacggtcgtggtgcagcgcgccggcgacgtcatcccg
caggtggtgcgggtgaccgacgctgaccggaagggcaggggcccggcgtttgagttcccc
catgtctgtcccgtctgcggcagccacgcggcgcgcgatgagggggaggtggtctggcgc
tgcaccggcggcctcacctgccgcgcgcaggcggtggagcggctccgccatttcgtctcg
cgcggcgcgatggacattgaggggctcggcgagaagcagatcgaggccttctacgagtgg
ggcgagatccgcgagccggcggacatcttcaccctggagaagcgcgagaagaccgaaggt
cggctcaccgcgctgaagaaccgcgaaggctggggcgagacctcggccaggaacctctat
gcggcgatcgaggcggcgaagtcgcagaccgtcgaccggctgctgtacgggctcggaatc
cgccatgtcggcgagaccaacgccaagcgcctgatgcgccatttcgcgaccatcgacgcc
ttgcgcgaggcggcgaaggccgcgacgtcgccgagcggcgaacggggcgacaagggcgac
gaggcctggcgcgagatcgtcgacatcgacggcatcggcgccgtggtggccaaggccgtg
gtggagttcttccgcgaacccaagaacgacccgccgctcgacgcgctgctcgccgaggcg
acgccctcggccatggaggcgagggcggaaagctctccggtctctgggctcaccgtggtg
ttcaccggcgcgctcgagaagatgacgcgcgacgaagccaaggcgatggccgagcggctg
ggcgcgaaggtctcgggctcggtgtcgaagaagaccgacctcgtggtggcgggcccgggc
gcaggctccaagctcgagaaggccaaggagctcgggatcgagacgctgaccgaggacgag
tggctggcgcgggtcggcgagtaa
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integrated database retrieval system
