Clavibacter michiganensis subsp. insidiosus: VO01_05565
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Entry
VO01_05565 CDS
T03862
Symbol
kgd
Name
(GenBank) alpha-ketoglutarate decarboxylase
KO
K01616
multifunctional 2-oxoglutarate metabolism enzyme [EC:
2.2.1.5
4.1.1.71
1.2.4.2
2.3.1.61
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh00020
Citrate cycle (TCA cycle)
cmh00630
Glyoxylate and dicarboxylate metabolism
cmh00785
Lipoic acid metabolism
cmh01100
Metabolic pathways
cmh01110
Biosynthesis of secondary metabolites
cmh01120
Microbial metabolism in diverse environments
cmh01200
Carbon metabolism
cmh01210
2-Oxocarboxylic acid metabolism
Module
cmh_M00009
Citrate cycle (TCA cycle, Krebs cycle)
cmh_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
VO01_05565 (kgd)
00630 Glyoxylate and dicarboxylate metabolism
VO01_05565 (kgd)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
VO01_05565 (kgd)
Enzymes [BR:
cmh01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring)
VO01_05565 (kgd)
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.5 2-hydroxy-3-oxoadipate synthase
VO01_05565 (kgd)
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.61 dihydrolipoyllysine-residue succinyltransferase
VO01_05565 (kgd)
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.71 2-oxoglutarate decarboxylase
VO01_05565 (kgd)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
E1_dh
2-oxoacid_dh
Transket_pyr
OxoGdeHyase_C
2-oxogl_dehyd_N
PFOR_II
Motif
Other DBs
NCBI-ProteinID:
AJW78667
UniProt:
A0A0D5CHE2
LinkDB
All DBs
Position
complement(1150817..1154641)
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AA seq
1274 aa
AA seq
DB search
MSSQVTGTGTDDGSTGDFGANEWLVDEMYERFVVDKDSVDRSWWPILENYHTTVIEGREA
TPATGDQTAEAQIPDAESTSSPATTNTGSPAPTPAPASASAGQPDAQAQQPATGSQPAAR
TTSIAPKQQPLPAQAPAKAPARKGAEPTPPGEDEVSPLRGMAKSLATNMDASLTIPTATS
VRTIPAKLMIDNRIVINNHLKRARGGKVSFTHLIGWALIQALKEFPSQNVHYDEVDGKPS
VVSPAHINLGIAIDMPKPDGTRALLVPSITGAEAMTFGEFLSAYEDLVKKARGNKLAAGD
FAGTTISLTNPGGIGTVHSVPRLMKGQGAIIGAGALEYPAEFQGSSPKTLVELGIGKTIT
LTSTYDHRVIQGAGSGEFLKIVHERLIGQHGFYEDIFAALRIPYDPIQWATDINVDLSER
VSKTSRVQELINAYRVRGHLMADIDPLEYQQRTHPDLEITNHGLTFWDLDREFVTDGFGG
RRQALLRDVLGILRDSYCRTIGIEYMHIQQPDERRWIQGKVEQPYAKPTHDEQMRILSKL
NESEAFETFLQTKYVGQKRFSLEGGESTISLLDTLLQGAADHGLDEVAIGMAHRGRLNVL
TNIAGKSYGQIFREFEGTQDPRTVQGSGDVKYHLGTEGTFRGVHGEEMPVYLAANPSHLE
AVNGVLEGIVRAKQDRKPIGSFSVLPILVHGDASMAGQGVVFETLQLSQLRAYRTGGTVH
IVINNQVGFTTPPSESRSSVYSTDVAKSIQAPIFHVNGDDPEAVARVAHLAFEFRQEFKK
DVVIDLVCYRRRGHNEGDDPSMTQPLMYNLIEAKRSVRKLYTEALVGRGDITHEEYDAAQ
KDFQDRLERAFAETHAAQTSSIPIQTDDAGAVADLERPDSQQDDGHGEPETTGVSESVIQ
AVGDAHDNPPQGFSVHPKLQALMRKRLEMSRSGSIDWAFGELLAIGSLLLENTPVRLAGQ
DSRRGTFVQRHAVLHDRDNGQEWLPLANLSDRQARFWIYDTLLSEYAAMGFEYGYSVERP
DALVLWEAQFGDFANGAQTIIDEFISSAEQKWGQRSSVVLLLPHGYEGQGPDHSSARIER
FLQLCAEQNMTVARPSTPASYFHLLRRQAYSRPRRPLVVFTPKAMLRLRGATSDVEAFTS
GRFEPVIDDVRIEDRGAVRRVLLHSGKVHYDLLGELEKRQDTSIALVRLEQFYPFPEEQV
RRVVESYPEAEVVWVQDEPENQGAWPFVHVELGRVIPDHAVRVVSRPAAASPAAGSSKRH
ATEQTDLIARATAE
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgagccaggtgactggtacggggaccgatgacggttccacgggcgacttcggagcc
aacgagtggctcgtcgacgagatgtacgagaggttcgtggtcgacaaggactcggtcgac
cgcagctggtggccgatcctcgagaactatcacacgaccgtgatcgagggccgcgaggcg
acgccggccaccggcgaccagaccgccgaggcgcagatcccggacgcggagagcacctcc
tcccccgcgacgaccaacacggggtccccggcgccgacgccggcccccgcgtccgcgtcc
gccggccagccggacgcgcaggcgcagcagcccgccacgggatcccagcccgcggcgcgc
acgacgagcatcgccccgaagcagcagccgctccccgcgcaggcgcccgcgaaggccccg
gccaggaagggcgcagagcccacgccgcccggcgaggacgaggtctcccccctccgcggc
atggccaagtcgctcgcgaccaacatggacgcgtcgctcaccatcccgaccgcgacgagc
gtccgcaccatcccggcgaagctgatgatcgacaaccgcatcgtcatcaacaaccacctg
aagcgcgcccgcggcggcaaggtctccttcacgcacctcatcggctgggcgctcatccag
gcgctcaaggagttcccgagccagaacgtgcactacgacgaggtcgacggcaagcccagc
gtcgtctcccccgcgcacatcaacctcggcatcgcgatcgacatgccgaagcccgacggc
acgcgcgcgctcctcgtcccgagcatcacgggcgccgaggccatgaccttcggcgagttc
ctctccgcgtacgaggacctggtgaagaaggcgcgcggcaacaagctcgccgcgggcgac
ttcgccggcaccaccatctcgctcacgaaccccggcggcatcggcacggtccactccgtc
ccgcgcctgatgaagggccagggcgccatcatcggcgccggcgccctcgagtacccggcc
gagttccaggggtcctcccccaagacgctcgtcgagctcggcatcggcaagaccatcacg
ctcacgagcacctacgaccaccgcgtcatccaaggcgcgggctcgggcgagttcctcaag
atcgtgcacgagcgcctcatcggccagcacggcttctacgaggacatcttcgccgcgctc
cgcatcccgtacgacccgatccagtgggccaccgacatcaacgtcgacctctccgagcgg
gtctccaagaccagccgcgtgcaggagctcatcaacgcgtaccgcgtccgcgggcacctc
atggcggacatcgacccgctcgagtaccaacagcgcacgcacccggacctcgagatcacg
aaccacgggctcacgttctgggacctcgaccgcgagttcgtcaccgacggcttcggcggc
cgccgccaggcgctcctccgcgacgtcctcggcatcctgcgcgactcgtactgccgcacc
atcggcatcgagtacatgcacatccagcagcccgacgagcgccgctggatccagggcaag
gtcgagcagccctacgcgaagcccacgcacgacgagcagatgcgcatcctctcgaagctc
aacgagtccgaggcgttcgagacgttcctgcagaccaagtacgtcgggcagaagcgcttc
agcctcgagggcggcgagtcgaccatctcgctgctcgacacgctgctccagggcgcggcg
gaccatggcctcgacgaggtcgccatcggcatggcccaccgcggccgcctcaacgtcctc
accaacatcgcgggcaagagctatggccagatcttccgcgagttcgagggcacccaggac
ccgcgcaccgtccagggatccggcgacgtgaagtaccacctcggcaccgagggcacattc
cgcggcgtccacggcgaggagatgccggtgtacctcgcggcgaacccgtcgcacctcgag
gccgtcaacggcgtgctcgagggcatcgtccgtgccaagcaggaccgcaagcccatcggc
tcgttctccgtcctgccgatcctcgtccacggcgacgcctcgatggccggccagggcgtg
gtgttcgagaccctccagctctcgcagctgcgcgcgtaccgcacgggcggcacggtccac
atcgtcatcaacaaccaggtcggcttcaccacgccgccgtccgagtcccgctcgtcggtg
tactcgaccgacgtggccaagagcatccaggcgccgatcttccacgtgaacggcgacgac
ccggaggccgtggcgcgcgtcgcgcacctcgccttcgagttccgccaggagttcaagaag
gacgtcgtcatcgacctcgtctgctaccgccgtcgcggccacaacgagggcgacgacccg
tcgatgacgcagccgctcatgtacaacctcatcgaggccaagcgctcggtgcggaagctg
tacacggaggcgctcgtcggtcgcggcgacatcacgcacgaggagtacgacgcggcgcag
aaggacttccaggaccgcctggagcgcgccttcgcggagacgcacgcggcgcagacctcg
tccatccccatccagaccgacgacgccggcgccgtcgcggacctcgagcgccccgactcc
cagcaggacgacggccacggcgagcccgagaccacgggcgtgtccgagtccgtgatccag
gcggtcggcgacgcgcacgacaacccgccgcagggcttctcggtgcatccgaagctgcag
gcgctcatgcgcaagcggctggagatgagccggagcggatccatcgactgggccttcggc
gagctcctcgccatcggctcgctcctgctggagaacacccccgtccgcctcgcgggccag
gactcccgccgcggcacgttcgtccagcgccacgcggtgctgcacgaccgcgacaacggc
caggaatggctgccgctcgcgaacctcagcgaccgccaggcgcggttctggatctacgac
acgctgctcagcgagtacgccgcgatgggcttcgagtacggctactccgtcgagcggccc
gacgcgctggtcctctgggaggcccagttcggcgacttcgccaacggcgcgcagaccatc
atcgacgagttcatctcctcggccgagcagaagtggggccagcgctcgagcgtcgtgctg
ctgctgccgcacggctacgagggccagggtcccgaccactcctccgcgcgcatcgagcgg
ttcctgcagctgtgcgccgagcagaacatgacggtcgcgcgtccctcgacgcccgcgtcg
tacttccacctgctccgccgccaggcgtactcccggccccgtcgcccgctcgtggtcttc
acgccgaaggccatgctgcggctccgcggcgccacgagcgacgtcgaggccttcacctcg
ggccgcttcgagccggtgatcgacgacgtccggatcgaggaccgcggcgccgtccgtcgc
gtgctgctccactccggcaaggtgcactacgacctgctcggcgagctggagaagcgccag
gacacctcgatcgccctcgtgcggctcgagcagttctacccgttccccgaggagcaggtg
cgccgcgtcgtcgagtcgtacccggaggccgaggtcgtgtgggtgcaggacgagcccgag
aaccagggcgcctggccgttcgtgcacgtggagctcggccgagtcatccccgaccacgcc
gtgcgcgtcgtctcccgtccggctgcggcgtcgcccgccgccggctcgagcaagcggcac
gcgaccgagcagacggacctgatcgcgcgggccaccgcggagtga
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