Caldinitratiruptor microaerophilus: caldi_23430
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Entry
caldi_23430 CDS
T08566
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmic
Caldinitratiruptor microaerophilus
Pathway
cmic03030
DNA replication
cmic03410
Base excision repair
cmic03420
Nucleotide excision repair
cmic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
caldi_23430 (ligA)
03410 Base excision repair
caldi_23430 (ligA)
03420 Nucleotide excision repair
caldi_23430 (ligA)
03430 Mismatch repair
caldi_23430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmic03032
]
caldi_23430 (ligA)
03400 DNA repair and recombination proteins [BR:
cmic03400
]
caldi_23430 (ligA)
Enzymes [BR:
cmic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
caldi_23430 (ligA)
DNA replication proteins [BR:
cmic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
caldi_23430 (ligA)
DNA repair and recombination proteins [BR:
cmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
caldi_23430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
caldi_23430 (ligA)
MMR (mismatch excision repair)
DNA ligase
caldi_23430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
caldi_23430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
HHH_8
HHH_3
Auto_anti-p27
DNA_pol_lambd_f
DUF4796_N
UPF0758_N
Zn_ribbon_NUD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BDG61253
UniProt:
A0AA35CMR8
LinkDB
All DBs
Position
complement(2383502..2385553)
Genome browser
AA seq
683 aa
AA seq
DB search
MRVAPGREQAAARIAELVEQIEYHNHRYYVLDDPVISDAEYDALMRELQDLEAAYPDLRR
PDSPTQRVGGAPLPDFPKVRHDPPMLSLDNAFGEDELRDFDRRVRQLAEGRAPDGRVRYV
GELKIDGFSIALRYENGVFVRGATRGDGFEGEEVTEQLKTVRSIPLRLRPVDGRLPAFLE
VRGEVYMPIRSFEELNARQAAEGKKVFANPRNAAAGSVRQKDPRVTASRGLDSFMYALVR
ADGLPPVTSHWEALELLARLGFKVNPERRVFENIDEVVAWTEEWRDKRFTLPYEIDGLVV
KVDDLALREVLGATSKAPRWAVAYKFPAEQRETRVVAITVDIGRTGAVTPTAELEPVRLA
GTVVRRATLHNEDYVRAKDVRVGDTVVVQKAGEIIPEVVRVVPEKRPPGTEPWRMPETCP
VCGTPLVRPEGEAATRCPNIACPAQTFRAILHYASRDAMNIEGLGEAIIGQLLDEGLIRD
PADLYALRKEQLEVLERLGPKSAENLVNAIARSKENPLHRLIYALGIRGVGERAARVLAR
HYRSLDDLARAGEEELTAIEGVGPVIAQNIVSFFREERSRRLIEKLRASGVRMEALPDEV
PAGEPAGPLAGQTVVVTGTLRSWGRKEIEELIERLGGKAAGSVSRKTSFVLVGESPGSKL
EKARELGIPVLTEDEFKARFGLR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtgagggtggcacccgggcgcgagcaggccgcggcgcgcatcgccgagctggtggagcag
atcgagtaccacaaccaccggtactacgtcctggacgaccccgtcatcagcgacgcggaa
tacgacgcgctcatgcgggagctgcaggacctggaggccgcctatccggacctgcggcgg
ccggactcgcccacccagcgcgtgggcggcgcccctctccccgacttccccaaggtgcgc
cacgacccgccgatgctctccctcgacaacgccttcggtgaggacgagctgcgggacttc
gaccggcgcgtgcggcagctggcggaggggcgcgccccggacggccgggtgcggtacgtg
ggcgagctgaagatcgacgggttcagcatcgccctgcggtacgagaacggcgtcttcgtg
cgcggcgccacccggggcgacgggttcgagggcgaggaggtcaccgagcagctcaagacg
gtccggtcgatccccctgcggctccggcccgtcgatggccgcctgccggccttcctggag
gtgcgcggggaggtctacatgccgatccgctccttcgaggaactgaacgcccggcaggcc
gccgaggggaagaaggtcttcgccaacccccgcaacgccgcggcgggctccgtgcgccag
aaggacccccgggtgacggcctcgcggggcctggacagcttcatgtacgcgctggtgcgg
gccgacgggctgccgccggtcacctcgcactgggaggcgctcgagctgctggcgcggctg
gggttcaaggtgaacccggagcggcgtgtgttcgagaacatcgacgaggtcgtggcgtgg
accgaggagtggcgggacaagcgcttcacgttgccctacgagatcgacgggctcgtggtg
aaggtggacgatctcgcgttgcgggaggtgctcggcgccacgagcaaggcgccccgctgg
gcggtcgcctacaagttcccggccgagcagcgggagacgagggtggtggcgatcaccgtc
gacatcgggcgcaccggggccgtgacccccacggccgagctggagcccgtgcggctggcg
ggtacggtggtccggcgggcgaccctccacaacgaggattacgtccgggccaaggacgta
agggtgggagacacggtcgtcgtccagaaggcaggggagatcatcccggaggtcgtccgg
gtggtgccggagaagcgcccgccggggaccgagccctggcgcatgcccgagacttgcccc
gtctgcggcacgcccctcgtgcggccggagggggaggcggccacccgctgcccgaacatc
gcctgcccggcccagaccttccgggcgatcctccactacgcgtcgcgcgacgccatgaac
atcgaggggctgggcgaggcgatcatcggccaattgctggacgaagggctcatccgggac
cccgccgacctgtacgcgctgcgcaaggagcagctcgaggtccttgagcgcctggggccc
aagagcgccgagaacctggtcaacgccatcgcccgcagcaaggagaacccgctccaccgg
ctcatctacgcgctcggcatccggggggtgggcgagcgggcagcccgggtgctggcccga
cactaccggtccctggacgatctggcgcgagccggcgaggaggagctcaccgccatcgag
ggcgtggggccggtcatcgcgcagaacatcgtgagtttcttccgggaggagcgcagccgc
aggctcatcgagaagctgcgggcgtccggggtgcggatggaggcgctcccggacgaggtc
cccgccggggagccggccgggccgctcgccggtcagaccgtggtcgtcaccggcacgctg
aggtcgtgggggcgcaaggagatcgaggaactcatcgagcggctcggcggcaaggcggcc
ggtagcgtgagccggaagacctccttcgtcctggtgggggagtcgcccggctccaagctg
gagaaggcccgggaactcggcatccccgtgctgaccgaggacgagttcaaggcccgtttc
gggctcaggtag
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