Christensenella minuta: B1H56_04290
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Entry
B1H56_04290 CDS
T05665
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmiu
Christensenella minuta
Pathway
cmiu03030
DNA replication
cmiu03410
Base excision repair
cmiu03420
Nucleotide excision repair
cmiu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B1H56_04290
03410 Base excision repair
B1H56_04290
03420 Nucleotide excision repair
B1H56_04290
03430 Mismatch repair
B1H56_04290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmiu03032
]
B1H56_04290
03400 DNA repair and recombination proteins [BR:
cmiu03400
]
B1H56_04290
Enzymes [BR:
cmiu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B1H56_04290
DNA replication proteins [BR:
cmiu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B1H56_04290
DNA repair and recombination proteins [BR:
cmiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B1H56_04290
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1H56_04290
MMR (mismatch excision repair)
DNA ligase
B1H56_04290
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B1H56_04290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
BRCT_2
PTCB-BRCT
HHH
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AYH39763
UniProt:
A0A136Q301
LinkDB
All DBs
Position
complement(886198..888177)
Genome browser
AA seq
659 aa
AA seq
DB search
MERMKELVDQLNDYAYRYYVLDDPSVADAEYDRLYDELAALEKRTGKIEPDSPTQRVGGK
LLEGFQKHTHLAPLWSLDKAQSLDDVISWQERTNKQIRALGLPDASYSLEYKFDGLTINL
TYDGGYLVSAATRGNGIVGEDVTEQVKTIQSIPLKIDFTGKTEVQGEAVMRLSVLKKYNE
TADEPLKNARNAAAGAIRNLDPGQTAKRHLDAFIYNVGYIEGRTFQDHQEMIAFLRENKF
NVSAYERVFNDVADIKAAVDNVERTRDTLDFLIDGMVIKITDFATREALGYTQKFPRWAI
AYKFAAEEMTTKILDVTWDVGRTGKLTPLAHLEPVELAGATIRRATLNNYEDILRKHAAI
GANVFIRRSNDVIPEILGASPLQEGELTPIDKPTHCPACGTELEEVGPNLFCPNSLNCKP
QLTSRMVHFVSRDAMDIENLSEKTIELMFEKLDIKDIAAIYTLTDKQLLSQEGFKEKRTE
NILSAIEASKKPPLANFIYALGISNVGKKTAKDLAQTFHTYERLKNATIEELVAIRDVGE
VVAKDIVDFFRNENYMRVVQELFDAGVQPREDAGAAEGGKFEGKTFVLTGTLTQYTRKQA
QELIENLGGKTSSSVSKKTDYVVAGEEAGSKLRKAQELGVAVLSENEFVRVCCKELELC
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtatgaaagagctggtcgatcaactgaatgattacgcataccggtactatgtg
cttgatgatccgtcggtcgctgacgcggagtatgacagactctatgatgagcttgcggcg
cttgagaagaggactggaaaaatcgagcccgattccccgacgcagcgtgtgggcggaaag
cttctggaaggattccaaaaacatacgcaccttgcgccgctgtggagccttgacaaagcg
cagagccttgacgacgttatttcctggcaggagcgtaccaacaagcagatacgggcgctc
gggctgccggacgccagctattctctcgaatacaagtttgacggccttacgatcaacctg
acctatgacggcggatatctcgtcagtgctgcaacgcgcggaaacggaattgtgggggaa
gatgtcacagaacaggtgaaaacgatacaatccatccctttaaagatcgatttcacgggc
aaaacagaagtgcagggagaggcggtcatgcgtctatcggtactgaaaaaatataatgaa
acggcagatgagccgctcaaaaatgcgcgtaatgcagcggctggggcaatcaggaacctt
gacccgggccagaccgcaaaaaggcatttagacgcctttatttataacgtggggtatatt
gaaggcaggacgtttcaggatcatcaggagatgatagcgttcctccgggagaacaaattc
aatgttagcgcctatgaaagggtttttaacgacgtagcggatatcaaggcagcggtagac
aatgtggagcggacgcgtgacacgctggatttcctgatcgacggtatggtaatcaagata
acggactttgcaacgcgtgaagcactgggctatacgcagaaatttccgcgctgggcgatc
gcttataaatttgccgcagaagagatgacaacaaaaattttagacgtgacatgggatgtg
ggcaggacgggtaaactgacgcctttggcacatcttgaaccggttgagcttgcaggggcg
acgatccgcagggccacgctcaacaattatgaagatatcctccgcaagcatgccgctatc
ggcgcgaacgtattcatccggcgttctaatgatgtgatcccggaaatactgggcgcatct
cctttacaggagggtgagcttacgccgattgataaaccgacgcattgcccggcctgcgga
acggagctcgaggaggtaggaccgaatcttttctgccccaattcgctgaactgtaaaccg
cagctcacttcgcgcatggtgcattttgtgtcgagagacgcaatggatattgaaaacctc
agtgagaaaacgatcgaactgatgtttgaaaagcttgacatcaaagatatcgcggcgatt
tatacattgacggacaagcagcttttgagccaggaggggtttaaggaaaagagaacggag
aatattctttctgctattgaagcgagcaaaaaacctccgcttgcgaattttatttatgcg
ctcggcatttcgaatgtcggaaaaaagaccgccaaggaccttgcccagacgtttcatact
tatgaacgactgaaaaatgcgaccatagaagagcttgtggcaattcgggacgtgggagag
gttgtggcaaaggatatcgtcgattttttccgcaacgaaaattacatgcgtgtcgtgcag
gagcttttcgacgcaggcgtgcagccgagggaggatgccggggctgcggaaggaggtaaa
tttgaggggaaaacatttgtgctgacgggaacgcttacccaatatacgcgcaagcaggcg
caggagctcattgaaaatctcggcgggaagacaagttcttccgtcagcaaaaaaacagat
tatgtagtggcgggcgaggaagctggcagcaagctccggaaagcgcaggagcttggtgtc
gcggtattatcggaaaatgagtttgtgagagtatgttgtaaggagttggaattatgctga
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