Callorhinchus milii (elephant shark): 103175202 Help Entry 103175202         CDS       T03088                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism cmk  Callorhinchus milii (elephant shark) Pathway cmk04115   p53 signaling pathway cmk04145   Phagosome cmk04148   Efferocytosis cmk04350   TGF-beta signaling pathway cmk04510   Focal adhesion cmk04512   ECM-receptor interaction cmk04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cmk00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     103175202 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     103175202 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     103175202 (thbs1b)    04148 Efferocytosis     103175202 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     103175202 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     103175202 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     103175202 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cmk04131]     103175202 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cmk00536]     103175202 (thbs1b) Membrane trafficking [BR:cmk04131]  Endocytosis   Phagocytosis    Opsonins     103175202 (thbs1b) Glycosaminoglycan binding proteins [BR:cmk00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    103175202 (thbs1b) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 TSP1_ADAMTS TSP1_CFP_C EGF cEGF Laminin_G_3 TSP1_CCN Motif Other DBs NCBI-GeneID:  103175202 NCBI-ProteinID:  XP_007886260 UniProt:  V9K8A4 LinkDB All DBs Position Unknown AA seq 1168 aa AA seqDB search MNLPQGLFLLVMIAVCSTMRIQESGADGVFDLFDITGLTRRNPGVQMIKGPERSSPAYRI LDADAIQPASPDSYSDLIDHVHQEKGFIFLATLRQMKKSRGTLVAIDTLEGRRVFEIMSN GKANTLDLTITIEGKQSMVSITDAHLATFHWKNLTLFVQEDVATLYVGCEKINQVELEEV IYKVLKSGNYKLRLAKGGTGLSNNFQGLLQNVRFVFGTNLETILLNKGCYRSTRGTVTLP IEGSEKPARRTHYSAHKTKDLQTICGISCEELSNMFSELKTLRKLVTQLVDNIQKVTAEN ELIASTIGIKQIGGCLHNQMLYKDKDHWKVDNCTECSCGSAVTTCQRISCPTVSCANAVV PDGECCARCPSILNESEAGWSPWSEWTHCSVTCGIGTQQRGRSCDRINSDCYGTSVQTRS CHLEECDKRFKQDGSWSYWSPWSSCSVTCGSGVITRIRLCNSPMPQMGGKDCTGEKRENE KCEQKPCPVDGNWGIWSPWDSCTVTCGGGIQKRTRLCNSPAPKYGGKKCVGNTRETQPCS KLKCPIDRCLSNPCFANVKCTSFPDGTWKCGDCPSGYRGNGIKCEDINECKEVPDTCFIV NEDHRCENTEPGYHCQPCPLRYTGNQPFGKGIEDATNNKQVCEPQNPCKDRTHNCNKHAK CIYLGIFSDPMFRCECRPGYAGNGIICGEDTDLDGWPNEDLTCVANATYHCKKDNCPFLP NSGQEDHDKDGIGDACDNDDDNDGIPDERDNCPFLFNPRQYDYDRDDVGDRCDNCPYNHN PDQADTDSNGEGDACAIDIDGDGILNEKDNCPYLYNVDQRDTDLDGVGDQCDNCPLEHNP DQADSDSDLVGDTCDNNQDIDEDGHQNNLDNCPYIPNSNQLDHDKDGKGDACDHDDDNDG IPDEKDNCRVKFNPDQLDSDGDGRGDACKDDFDGDNILDIYDVCPENFDISETDFRKFQM VPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTERDDDY AGFVFGYQSSSRFYVVMWKQITQTYWHETPTKAQGYAGLSIKVVNSTTGPGEHLRNALWH TGNTSGQVRTLWHDPRNIGWKDKAAYRWQLTHRPKTGFIRVVMYESKKIMADSGAIYDNT YAGGRLGLFVFSQEMVYFSDLKYECRDS NT seq 3507 nt NT seq  +upstreamnt  +downstreamnt atgaatttaccacaaggactctttctacttgtaatgattgctgtctgctcaaccatgagg atacaagaatccggagcggatggggttttcgacctctttgatatcaccggactcactcgc aggaatcctggagtgcaaatgatcaaaggaccagagcgcagcagcccagcctacaggatc ctggacgctgacgccatccaacccgcctcacccgacagctacagcgacctcatcgatcac gttcaccaagagaaggggttcatcttcctggccactctgcgccagatgaagaagagccgg ggaaccctggtggccatcgacaccctggaaggcaggcgcgttttcgagatcatgtcgaac ggaaaagccaacaccctcgacctgacgatcaccattgaaggtaaacagagcatggtgtcc atcaccgatgcccacctggccactttccactggaagaacctcacgctgttcgtgcaggag gatgtggccaccctctacgtgggctgtgagaagatcaaccaagtggagctggaggaagtc atctacaaggtcctgaagtctggcaactacaaactcaggctggccaaaggtggaacaggt ctttccaacaacttccagggactcctgcagaatgtgcgcttcgtgtttggaaccaatttg gaaaccatccttctcaacaagggctgctacagatccactcgtgggactgttactttacca attgaagggtctgaaaagccagctcgcagaactcattattctgctcacaaaaccaaggat cttcagaccatctgcggtatctcgtgcgaggaactgtccaacatgttcagtgaacttaaa actctcaggaagctagtgactcagctggttgacaacatccagaaagtgactgcagaaaat gaactcatcgctagtacgattggaatcaaacagatagggggatgtctccacaatcagatg ctctacaaagataaagaccattggaaagtggataactgcacagaatgcagctgtgggtca gcggttaccacttgccaaaggatatcatgccctactgtatcctgtgctaacgctgtggtt ccagacggagagtgctgtgctcgatgcccatcaattctaaatgaatctgaagctggctgg tctccatggtctgaatggacacactgttctgtcacttgtggcattggaacacaacagcgg ggccgctcttgtgatcggattaatagcgactgttatgggacttctgttcagactcgcagt tgtcatttggaagagtgtgacaagagattcaagcaagatggtagttggagttattggtcc ccttggtcctcatgctcagttacctgtggatctggagtcatcactcgaatccgcctgtgt aactctccaatgccacaaatgggtggtaaagactgcacaggagagaagagagaaaatgag aaatgcgaacagaagccctgtccagttgatggaaactggggtatctggtcaccatgggat tcttgcactgtcacctgtggtggtggaattcagaaacgaacacgcctttgtaacagccca gcaccaaaatatggtggcaaaaaatgtgtgggcaacactcgtgaaactcaaccatgcagt aaattaaagtgcccaattgatagatgtctatcaaacccatgctttgctaacgtcaaatgc accagcttcccagatggcacctggaaatgtggtgactgtccttctggttacagaggaaat ggcattaaatgtgaagatatcaatgagtgcaaagaagtacctgacacttgcttcattgtc aatgaagaccaccgatgtgaaaacacagagccaggttaccactgtcaaccctgtccgcta cgatacactggcaatcaaccatttggtaaaggcattgaagatgcaacaaacaataagcag gtctgtgagccacagaatccctgcaaagataggacacataattgcaacaagcatgccaag tgtatttatcttggtatatttagcgatccaatgttccgttgtgaatgtaggcctggttat gctggcaatggcatcatctgtggcgaagatactgatctagatggttggccaaatgaagat cttacctgtgtagctaatgctacttaccactgcaaaaaggataactgcccattcctcccc aactctggtcaagaagaccatgataaagatggaattggtgatgcctgtgacaatgatgat gacaacgatggcattccagatgaaagggataactgtccattcctgttcaatcctcgccaa tatgactacgatcgggatgatgttggagatcgttgtgacaactgcccctacaatcataat cctgatcaggcagacactgattcaaatggagaaggagatgcatgtgctatagatattgat ggggatggcattctcaatgagaaggacaattgtccctacttgtacaatgttgatcagaga gatacagatttagatggtgttggtgatcagtgcgacaattgcccactagaacataatcca gatcaggctgattctgactctgatcttgtgggagacacgtgcgataacaatcaggatatt gacgaggatggtcaccaaaacaatttagataattgtccctacattcccaattctaaccaa ttggaccatgacaaagatggcaagggcgatgcctgtgatcacgatgacgacaatgatggc atccctgatgaaaaagacaactgtagggtgaaattcaatcctgaccaacttgactctgat ggtgatgggagaggtgatgcttgcaaggacgattttgatggagacaacatactggatata tatgatgtctgccctgaaaactttgacatcagtgagactgacttccgcaaattccagatg gtcccattggatccaaagggaacatcccaaattgatcccaactgggtggttcgacaccag ggcaaagagttggtgcagactgttaactgtgatcctggtattgctgtaggatttgatgaa ttcaattccgtggacttcagtggcactttcttcattaatactgaaagagatgatgactat gctggatttgtgtttggataccagtccagcagtcgtttctacgtggtcatgtggaaacag atcacacaaacatattggcatgaaacaccaaccaaagcacagggctatgctggactttcc atcaaggtggtgaactctacaactggtccaggagaacacttgcgtaatgctctgtggcac actgggaatacaagtggacaggtccgcactttatggcatgaccctcgtaacattggatgg aaggacaaggctgcttacagatggcagctcacacacagacccaaaactggattcattaga gttgtaatgtatgagtcaaagaaaatcatggcagactctggggctatctatgacaacacg tatgctggtggacgattgggactctttgtcttctcccaagaaatggtttacttctctgat ctcaagtatgaatgtagagattcataa

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