KEGG   Callorhinchus milii (elephant shark): 103175325
Entry
103175325         CDS       T03088                                 
Symbol
traf3
Name
(RefSeq) TNF receptor-associated factor 3
  KO
K03174  TNF receptor-associated factor 3
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk04620  Toll-like receptor signaling pathway
cmk04621  NOD-like receptor signaling pathway
cmk04622  RIG-I-like receptor signaling pathway
cmk05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    103175325 (traf3)
   04621 NOD-like receptor signaling pathway
    103175325 (traf3)
   04622 RIG-I-like receptor signaling pathway
    103175325 (traf3)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    103175325 (traf3)
SSDB
Motif
Pfam: TRAF-mep_MATH zf-TRAF TRAF3_RING zf-C3HC4 zf-TRAF_2 zf-C3HC4_2 zf-RING_6 zf-RING_2 zf-rbx1 DUF2968 zf-RING_5 TPR_MLP1_2 zf-RING_UBOX Sina_ZnF DUF2203 zf-C3HC4_4 Exonuc_VII_L DUF745 ATG16
Other DBs
NCBI-GeneID: 103175325
NCBI-ProteinID: XP_042194173
LinkDB
Position
Unknown
AA seq 589 aa
MTAMNQRFGRPQAMAAGRNIESHQLSLQSPLQQANVSHPQDSRSLCATIEPKHGGFKERF
LLKLEEKYKCEYCRHALCNPKQTECGHRFCESCLSNVFRNQNPVCPVDNEPLFETKVFKD
ICCKREILSLKIYCRNEKNGCKDQLCLGKLEAHLLECPYQEVRCTRRGCTERVQRKDLAD
HLNSSCKYREQACKFCRKEITMAELKKHEELECPSVLVKCPNKCNVSVLRSELSSHLLQC
PNVVVHCSYSNYGCNFLGTNQELKTHEANAMAQHLNLSMIRNVDNETKVSQLQNELQDKC
KIIQSMSIQISTLEKELVKFGQLANKNEGRLGHLQKMLANQTDQLFTINQASQQTHQRQE
ETIREVKVVKESVDGLQTRVRQLEVTSRAGNAGAGQSSLTGLDNQVRRHDSLLSVHDVRL
ADMDLRFQVLETASYNGKLIWKIREYTRRKQEAVSGKTLSLYSQPFYTGYFGYKMCARVY
LNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLLDQGAEESHLGDAFKPDPNSS
SFKRPLGEMNIASGCPLFVTQTVLESRTYIKDDTIFIKVSVDTSDLPDP
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgacagcaatgaatcagagatttggacggccacaggccatggcagccggaagaaacata
gagtcgcaccagctttctctgcagtcacctctgcaacaagctaatgtctctcatccccaa
gatagcaggtcactgtgcgccaccatcgagcctaagcatggaggcttcaaggagaggttt
ctgcttaaactggaggagaagtacaaatgcgagtattgccgtcatgcactttgcaatcca
aagcaaactgaatgtggccacaggttctgtgaaagctgcttgagtaacgtttttcggaat
cagaatccagtttgtccagttgacaatgaacctttatttgagactaaggtatttaaagac
atctgctgcaaaagagagattctaagtctcaaaatctactgtaggaacgagaaaaatggt
tgcaaagaccagctatgcctaggaaaacttgaggcccacctacttgaatgtccttatcag
gaggtccgttgtacacgcaggggatgtacggagagggtgcagaggaaagatctagctgac
catttaaattcaagctgcaaatatcgggaacaggcgtgtaaattctgcaggaaagaaatc
acaatggcagagctgaagaaacacgaagagttggaatgtccatcagtgctcgtgaagtgc
cccaataagtgcaatgtttctgttctgaggagtgagttaagtagccacttgttacagtgt
cccaatgtagttgtccactgcagttactctaattacggatgtaacttcctgggaactaac
caggagcttaaaacacatgaagctaacgctatggcacagcatttgaacctttcaatgatt
agaaatgtagataacgaaaccaaggtttcccagctccagaatgaactgcaggacaagtgt
aaaattatccagtccatgtccattcagataagcaccttggagaaagaactggtcaagttt
gggcaactcgcaaataaaaatgaaggtcggctgggccacttacagaaaatgttggccaac
cagacggaccaactgttcaccattaatcaagcttcacaacagactcaccagaggcaggag
gagacgatccgggaggtgaaggttgtcaaagaatctgtggacggactccaaacgagagtg
aggcagctggaagtcaccagcagagctgggaatgcgggtgctggacagagcagtctgact
ggattggacaatcaagtaaggagacacgacagcttgctcagtgttcacgacgtccgcctg
gcagacatggaccttcgatttcaagtcttggagactgccagctacaacggaaagctcatc
tggaaaatccgggagtacacccgccggaaacaggaggctgttagcggaaaaacattatcc
ttgtacagccagcccttctacacaggatattttggctacaagatgtgcgcccgggtttat
ctcaatggggacggtatgggcaaagggactcatttgtcactgttttttgtagttatgcgg
ggagaatatgatgccctgctaccctggccctttaaacagaaagtaactttgatgctgtta
gatcaaggagcagaagaaagtcatttgggcgatgctttcaagccagatcccaacagtagc
agcttcaagcgcccgctaggagagatgaacattgcttccggctgccctctctttgttaca
cagactgtcttggaaagcaggacttatattaaggacgacacgatctttatcaaagtaagc
gttgatacttcagatttgcctgacccatga

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