KEGG   Callorhinchus milii (elephant shark): 103184612
Entry
103184612         CDS       T03088                                 
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk04010  MAPK signaling pathway
cmk04137  Mitophagy - animal
cmk04141  Protein processing in endoplasmic reticulum
cmk04210  Apoptosis
cmk04217  Necroptosis
cmk04621  NOD-like receptor signaling pathway
cmk04622  RIG-I-like receptor signaling pathway
cmk04920  Adipocytokine signaling pathway
cmk05132  Salmonella infection
cmk05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103184612
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    103184612
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    103184612
  09143 Cell growth and death
   04210 Apoptosis
    103184612
   04217 Necroptosis
    103184612
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    103184612
   04622 RIG-I-like receptor signaling pathway
    103184612
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    103184612
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    103184612
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    103184612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmk03019]
    103184612
   04121 Ubiquitin system [BR:cmk04121]
    103184612
Enzymes [BR:cmk01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103184612
Messenger RNA biogenesis [BR:cmk03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     103184612
Ubiquitin system [BR:cmk04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    103184612
SSDB
Motif
Pfam: MATH_2 TRAF-mep_MATH TRAF3_RING zf-RING_UBOX zf-C3HC4_4 zf-C3HC4_2 zf-TRAF zf-C3HC4 DUF4472 DHC_N2
Other DBs
NCBI-GeneID: 103184612
NCBI-ProteinID: XP_007900920
LinkDB
Position
Unknown
AA seq 426 aa
MSYIGPLCRQVLRNPAKTACGHRYCMDYIQSVSGKTATVCQMSMEEGVSTKDTTTDPDVA
HKADEYRARIGCQTHVDPGMSEQQNVPREKIDGYENKGLKRKTCCLFQAVGCKYKGTREK
IRKHEEESVGQHIGLLLNEITKLNPDRLPPAAANTLPRLEAEVQELRLRVAAFSNSHRLN
ELCDKLQGFCRTAEAHIAGVEAKSASFEHTLDAAKEMKKCSEIVAVLNSWIQLGNQLILM
ENQLVDVEHQLQQAGQNIQDCTARLEVMEQLTHSGVFIWRIAQLEKRLQEAVDGTTPYLD
SGGFYSCKYGYKMCLRIYLNGHERAQGIHISLYFILLQGHYDTLNQWPFRKKVKLSLLNV
RDQRYSIVKSCVLSHLDLALQRPAASMNAPCGFSTFVSLPELKLRFSEFVDNDEMFVSAE
VDSSSL
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgagctacatcggtcccctgtgtcggcaggttctgaggaatccagcaaagactgcttgt
ggacaccgctactgcatggattacatccagtccgtctcaggtaagacagcaacagtatgt
cagatgagtatggaggaaggtgtttcaaccaaggatacaactactgatcctgacgtggct
cataaagcagatgagtatagggcacggatcggctgccagacccacgtggatcctgggatg
tctgagcagcaaaacgtaccaagggagaagattgatgggtatgaaaataaaggtttaaaa
aggaagacttgctgtttgttccaagccgtaggatgtaaatataagggaacgagagagaag
attcggaaacacgaggaagaatctgttgggcagcacatcggtcttttattgaatgaaatc
acaaagctgaatcctgacagactgccacctgctgcggcgaacaccttgccaaggttggag
gcagaagttcaggagttgcgattgagagtcgctgccttttcgaacagtcatcggctgaac
gaactctgtgacaaactgcagggtttctgcaggacggcggaagcccacatcgctggggtg
gaggccaaatcggcctcctttgagcacactttggatgcagcaaaagagatgaagaaatgc
tcggagatagtggctgttttgaacagctggatacagctcggaaatcaacttattctgatg
gaaaatcagctggtggatgttgagcatcaactgcaacaggcaggccaaaacatacaggat
tgcacggcacggctagaggtcatggaacagttaactcatagcggagtgtttatctggaga
attgcacaactcgagaaaaggttgcaagaagctgtcgatggaacaacgccttacctggat
tctggtggattttactcgtgcaaatatgggtataagatgtgtctccgaatatatctgaat
ggtcatgaaagagcccagggaattcacatctcactttattttattttgctccaaggacat
tatgatactttgaatcagtggccattcagaaaaaaggtaaaactctctctgctaaatgtg
agagatcaacggtattccattgtcaagagctgcgttctgagtcatctggacttggcttta
caaagacctgcagcaagtatgaacgcgccatgtggattttccacctttgtgtccttacct
gaattgaaactgcgtttctcagagtttgtggacaatgatgaaatgtttgtaagtgcagag
gtcgactccagcagtctgtaa

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