Callorhinchus milii (elephant shark): 121852210
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Entry
121852210 CDS
T03088
Name
(RefSeq) LOW QUALITY PROTEIN: TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk04010
MAPK signaling pathway
cmk04120
Ubiquitin mediated proteolysis
cmk04140
Autophagy - animal
cmk04144
Endocytosis
cmk04620
Toll-like receptor signaling pathway
cmk04621
NOD-like receptor signaling pathway
cmk04622
RIG-I-like receptor signaling pathway
cmk05132
Salmonella infection
cmk05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121852210
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121852210
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121852210
04140 Autophagy - animal
121852210
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121852210
04621 NOD-like receptor signaling pathway
121852210
04622 RIG-I-like receptor signaling pathway
121852210
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121852210
09171 Infectious disease: bacterial
05132 Salmonella infection
121852210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmk04131
]
121852210
04121 Ubiquitin system [BR:
cmk04121
]
121852210
Enzymes [BR:
cmk01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121852210
Membrane trafficking [BR:
cmk04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121852210
Ubiquitin system [BR:
cmk04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
121852210
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
TRAF3_RING
U-box
zf-RING_5
RING_XB3-XBAT31
zf-TRAF_2
HTH_DeoR
ATG16
SlyX
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
121852210
NCBI-ProteinID:
XP_042202216
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MSCGGGHEVDDEACCSARGLRTPGDTTDCSESGLSFHSVSGDDSATEAQGYEADFEPPLE
SKYECPICLMALREPVQTPCGHRFCRACILHSMRDAGPKCPVDNAVLHEGQLFPDNFAKR
EILSLTVRCPNKPCGHRGELRALQEHQLRCEYAQVPCVRCEMPVCRRDLAKHEEQECMRR
IVTCLHCCEKMAYQDSKNHEQMCPLVVVNCKHCQQELIREQLGPHLEVDCQQAQVPCTFS
PLGCEAQMVRSLLAAHMHEHTQVHMRLLANGLKILRIQVGQGAQPSSAAGSSAPPNSLSW
LSSTSGGDVQTAGASRSQGSRDRAACDCAQELDRLREITRTLEERVILQLHQIRELSAKT
DNQQGLLAEATRLVRSLEARVAESESRLCAGIFTWRVERFSRLLRMHPDAPAVMHSSGFY
TGVPGYRLCLRLQVLSGREGPAGAASPGVLLAGRQPHLALFVHLLQGDYDHRLPWPFNGR
IRISVVDQCERDSVHVTEMMDADPQLSAFQRPSVHRNPXGFGYMNFMDIKTLHHRSYLRD
DCLVVRCEVVTTLGPGGLQQQGLLLEDPPRPPNQPENVPHSMDEQSGEFNTTRIYSFVNI
PMCLQPVRAAFIIKTMSSLLFFIPIFSIEVVSSAYVDGFMNESLLIASGFAKYLRLREIN
FV
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgagctgtggtggtggtcacgaagtggacgatgaggcgtgctgcagcgcacggggattg
cgcacgccaggagacacaaccgattgttcagagagcggtctttccttccattcggtgtct
ggcgatgactcggccaccgaggctcaaggctacgaggctgactttgagccgccccttgag
agcaagtacgagtgccccatctgcctgatggcactgagggagcccgtgcagactccctgc
ggacaccgcttctgcagagcatgcatcctgcactccatgagggacgccggtcccaagtgc
cccgtggataacgccgtgctccatgagggacaactcttccccgataactttgccaagcgc
gagatcctgtcgctcaccgtgcgatgtcccaacaagccgtgtggtcaccgcggcgagctg
cgtgccctacaggaacaccagttgcgttgtgagtacgcgcaggtgccgtgtgtgcgctgt
gagatgcctgtgtgccggcgggacctggcaaagcacgaggagcaggagtgcatgagacgc
atcgtcacttgtctccactgctgtgagaagatggcataccaggactcaaagaaccatgaa
cagatgtgtccactcgtcgtggtgaattgcaaacactgccaacaggagctgatccgggaa
cagctggggccgcatctggaggtcgactgtcagcaagcccaggtgccctgcaccttcagc
ccgctcggctgtgaggctcagatggtgcggtcgctgctggccgctcacatgcatgagcac
acccaggtgcacatgcgtctcctggccaacggcctcaagatcctgcgtatccaggttggc
cagggtgcccaaccgtcctcggcggccgggtcctctgctccgcctaacagcctctcttgg
ctcagcagcacgagcggcggggacgtccagactgccggcgccagtcggagccagggttcg
cgcgaccgcgccgcgtgcgactgcgctcaggagctggaccggctgcgcgaaatcacgcgg
acgttagaggagcgcgtcatcctgcagctgcaccagatccgggagctgagcgccaagacg
gacaaccagcagggcttgcttgccgaggccacgcgcctcgtgcgctcgctggaggctcgc
gtggccgagtccgagtcgcgcctgtgcgcgggcatcttcacgtggcgcgtggagaggttc
tcacgactcctccggatgcacccagacgctccggctgtcatgcacagctcgggattctac
acaggagtccccggctaccgcctgtgccttcgcctgcaggtgctgagcggccgcgagggt
ccggcgggcgcggcttctcccggcgtgctgctcgccgggcgccaacctcatctggccttg
tttgttcacctgctgcaaggcgactatgaccaccgcctgccatggcccttcaacggtcgc
atccgcatctcggtggtggaccagtgtgagcgcgacagcgtgcacgtgacagaaatgatg
gatgccgatccgcagctgagtgccttccagcgcccctccgtgcaccgcaaccccnaaggt
tttggctacatgaatttcatggatatcaagaccctgcaccaccgctcttacctgcgcgat
gactgcctagtggtgcgctgtgaggtggtgacgacgctgggtccgggagggttgcagcag
caaggcctactgctcgaggaccccccacggcccccaaatcagcccgagaatgttccacat
tccatggatgagcagagtggagagtttaacacaaccaggatatattcgtttgttaacata
cccatgtgcctacagcctgtgagagcagcctttataatcaaaaccatgtcttccctgctt
ttttttatacccatcttctcgattgaagttgtgtcttctgcatatgtggatggcttcatg
aacgaatctttgttgatagccagtgggtttgcaaagtaccttcgtcttagagaaatcaat
ttcgtgtga
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integrated database retrieval system
