Caldicellulosiruptor morganii: OTK00_001461
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Entry
OTK00_001461 CDS
T08774
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmor
Caldicellulosiruptor morganii
Pathway
cmor03030
DNA replication
cmor03410
Base excision repair
cmor03420
Nucleotide excision repair
cmor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OTK00_001461 (ligA)
03410 Base excision repair
OTK00_001461 (ligA)
03420 Nucleotide excision repair
OTK00_001461 (ligA)
03430 Mismatch repair
OTK00_001461 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmor03032
]
OTK00_001461 (ligA)
03400 DNA repair and recombination proteins [BR:
cmor03400
]
OTK00_001461 (ligA)
Enzymes [BR:
cmor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OTK00_001461 (ligA)
DNA replication proteins [BR:
cmor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OTK00_001461 (ligA)
DNA repair and recombination proteins [BR:
cmor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OTK00_001461 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OTK00_001461 (ligA)
MMR (mismatch excision repair)
DNA ligase
OTK00_001461 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OTK00_001461 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
RUBY_RBDX
BRCT_2
HHH_8
PADR1_Zn_ribbon
RNA_lig_T4_1
DUF719
Motif
Other DBs
NCBI-ProteinID:
WAM33002
LinkDB
All DBs
Position
complement(1483613..1485634)
Genome browser
AA seq
673 aa
AA seq
DB search
MSEFIKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYIFPDSPT
QRVGGKVKEGFKEVVHKTPLLSLSNVFSEGELYDFDRRLRELLGTDDFNYVVEYKIDGLS
VALEYERGLFVRGATRGDGNVGEDVTENLKTIRSIPLRLKEDINIVVRGEVFMPKDEFIK
LNQEREENEEPPFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKELKTHDEALQF
LKYLGFKVSPDYVVCNNIKEVYEAIKNIEEKRGELSFEIDGAVVKLNQLALREVAGSTAK
SPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNMDYIR
QKDIRIGDTVVVQKAAEIIPEVVEVVFSKRTGNERIFEMPKKCPVCGADVIKFEDEVAYR
CTGVECPAKSYRLILHFVSRDAMDIAGMGEMIVKNLFERGLIKTPADIYYLKFDDLVNLE
RFGVKSTNNLLKAIEASKKRPLDRLIYALGIRHIGQKAAKTLAEHISSIDDLFTITEEEL
LKLPDFGEKMAKSVVTFFRQEKTKHLIERLKKAGVNTVSEKKAKSDLLKGYTFVLTGALS
KYSRTQAKEILESLGARVSESVSKKTTAVIVGEDPGSKFTKAQELGVKILYEQDFEKLIS
AKSREEVEKIIME
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagtttattaaaaaaaggattcgagaacttgttgacctgatcaattaccatgat
tataagtactatgttgaagacaatccggagataagtgactatgaatatgatatgctctac
agagaacttgtggagcttgaaaaacagtatccagaatacatcttccctgattcacccaca
cagagggttggtggtaaagtaaaagaggggtttaaagaggttgttcacaaaacgccactt
ttatcactttcaaatgtgttcagtgaaggtgaactttatgactttgacaggagactgaga
gaacttcttggtacagatgattttaattatgttgttgagtacaagattgacgggctttct
gttgcgcttgagtatgagaggggactttttgtaaggggtgcaacacgcggcgatggcaat
gtgggtgaggatgttactgaaaacttgaaaacaataaggtcaattccattgaggctcaag
gaggatataaatatagttgttcgtggagaggtgttcatgcccaaagacgagtttataaag
cttaatcaggaaagagaagaaaatgaagagcctccttttgcaaatccgcgaaatgccgca
gcaggatcgcttcgccagcttgaccccaggataacagcacaaagaaaacttgatatattt
gtttttaatgtacagtggtgcgagaaagaactcaaaactcacgatgaagcactgcaattt
ctgaagtatctgggatttaaagtttcacctgactatgttgtttgcaataatataaaagag
gtctatgaggcaatcaaaaatatagaagaaaaaagaggagagctttcttttgagatagac
ggtgctgttgtgaaattgaaccaattggctttgcgtgaggtggcgggttcaactgcaaag
tcaccgagatgggcggttgcctataaatttccaccagagaaaaaggaaacaaagctattg
gacattgaagttaatgttggaagaacaggtattttgactccgacagccatacttgaacct
gtaaggatttcaggttcggttgtgtcacgcgcgactcttcacaatatggactatataagg
caaaaagatattagaattggtgacacagtggtggtacagaaagctgcggagataataccg
gaggttgttgaagttgtattttcaaagcgcacgggaaatgaaaggattttcgagatgccc
aagaaatgtcctgtgtgcggggcggatgttataaagtttgaagatgaggttgcgtacaga
tgcacgggtgttgagtgccctgcaaagagctacaggttaattttgcactttgtatcgcgt
gatgcaatggacattgcaggcatgggtgagatgatagtaaaaaatctatttgaaagaggt
ttgatcaagacacctgctgatatttattatcttaaatttgatgatttagtaaaccttgaa
agatttggtgtcaagtctacaaacaatttattgaaggcaatagaagcatccaaaaaacga
cctcttgataggcttatatatgccctgggcataagacatatagggcaaaaagctgcaaag
acactggcagagcacatatcttcaattgacgacctgtttacaattactgaggaggaactc
ctaaaacttcctgactttggtgaaaaaatggcaaaaagtgttgtgacatttttccgtcag
gagaagacaaagcatctgattgaaagactcaaaaaagcaggggttaatacagtttctgag
aaaaaggcaaagtcagacctgttgaaagggtatacgtttgtgctgacaggtgctctttca
aagtattcaagaacccaggcaaaggagattttggagtccttaggtgcaagggtaagtgaa
agcgtctctaaaaaaactaccgcagtgattgttggtgaagaccccggtagcaagtttaca
aaagcgcaggagctgggcgtgaagatattgtatgagcaggattttgaaaagttgatttct
gcaaaatcacgcgaagaggttgaaaagattataatggagtga
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