Cucurbita moschata (crookneck pumpkin): 111450621
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Entry
111450621 CDS
T05248
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
111450621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111450621
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111450621
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
111450621
NCBI-ProteinID:
XP_022946604
UniProt:
A0A6J1G4A4
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
MGVPAFYRWLADRYPRSIADVVEEEPVDGPNGVVLPIDVSKPNPNGMEFDNLYLDMNGII
HPCFHPEGKPPPATYDDVFKSIFDYIDHLFSLVRPRKVLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKAFEADGQSLLPKEKPETCDSNVITPGTQFMAVLSVALQYYAH
SRLNHNPGWRFTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEIHFSILREVIMLPGQQEKCFNCGKVGHFAAECRGKSDGPEDWNAADETPIHKKK
YQFLNIWVLREYLQYELDIPNPPFEVDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAI
NLLMHIYRKEFPAMGGYLTDAGEVMLDKVEHFIQAVSVHEEQIFQKRARIQQQAQENNEE
MRGRARRENGPAPPVPTIDKIKLGEPGYKERYYAEKFNANSENIAEIKQDVVLKYVEGLC
WVCRYYYSGVCSWQWYYPYHYSPFASDLENLADLEITFFLGEPFKPFDQLMGTLPAASST
ALPEKYRNLMTDHSSPILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLESA
LTDEEKNRNSVMLDLLYTHCAHPLSAQVFSYYQVASQLPPRERTCWVIDTNASGGMNGYL
WLCERNVFRNVFPSPISSLPDIQHNQVLNVTYLNPQKHEHVPRPPKGVIIPKKVLSSLDI
KPFPTLWHEDNNSRRYHGRERPQVPRAIAGPLLGEAAHRLVKNTLNIKPNGGSSSGLFDQ
PYSRNFPGQPIFSRPRQVGSSGYETGYGEDPNYSYGHYNNYQGASGRPRYPNSSNGMPGD
NRQTSRGNDIQHQERYNNVRTGMSALTIEESMRNRSLDMLTPGLSPMMMPKMLNVGNSAN
QQNFAQATDALPSPPHKWINRAPTPTANIMYARQQENFTGGANEKQAKQMYLAKTPAFQS
GSGSGSRQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccctgccttctacaggtggcttgccgaccggtacccccggtcgatcgccgat
gtggtcgaggaagagccagttgatggccccaacggggtcgtcttgccgatcgacgtctcc
aagcctaaccctaatggaatggagtttgacaacttgtatttggatatgaatggcataatt
catccgtgctttcatcctgaaggcaagcctccaccagctacatatgacgatgtatttaaa
tccattttcgattacattgaccatctcttctcattggttcggccaagaaaagttctttac
atggcaattgatggtgttgcacctagagctaaaatgaatcagcaacgttctcggcgtttc
agagctgcaaaagatgctgccgaggccgaagctgaagaagaaagattaagaaaagcgttt
gaagctgatgggcaaagcttattacctaaggagaagcccgaaacatgtgactctaatgtc
atcactcccggaactcaatttatggcagtgctctccgtagcacttcagtattatgcgcat
tcaagattaaatcacaacccagggtggaggtttacgaaggttattctatctgattcaaat
gttcctggcgagggagagcacaaaattatgtcatacattcggctacaacgcaatttgcct
ggttttgatccaaacactcgacattgtctgtacggtctggatgcagatctgattatgctt
agtctagcaacacacgagattcacttttcaattttaagagaggtaataatgctaccaggg
caacaggaaaaatgtttcaattgtggcaaagttggtcattttgcagctgagtgtcgtgga
aagtctgatggtccagaagattggaatgcagccgatgaaactccaattcataaaaagaaa
tatcagtttctcaacatttgggttttacgagaatacttgcagtatgaattggacattccc
aatccaccttttgaggttgatttcgagcggatagtggatgattttgtgtttttgtgtttc
tttgttggcaacgattttcttccacatatgccaaccttggagataagagagggtgctatt
aatttgctgatgcacatatatagaaaggaatttcctgctatgggtggttatcttactgac
gcgggtgaggttatgttagataaagtggagcattttatccaagctgtatctgtacacgaa
gaacaaatctttcaaaaaagagcccgaattcagcagcaggcacaagagaataatgaagaa
atgagaggtagagctagaagagaaaatggtcctgcgcccccagttccaacaattgacaag
atcaagttaggggagcctggatacaaggagaggtattatgctgagaagttcaatgctaac
tcagaaaacattgctgaaataaaacaagatgtggtcttgaagtatgtggagggtttatgt
tgggtctgtcgatattactattcaggggtttgctcttggcaatggtattatccttaccat
tattcaccttttgcctctgaccttgaaaacttggctgatttggagataacctttttcctc
ggagagccatttaaaccttttgatcaactgatgggaacgctaccagctgcaagttcaacc
gctcttcctgagaaatacagaaacttgatgaccgatcattcatcgccaatccttgaattt
tatccttcagattttgagattgacatgaatggaaagcgttttcaatggcagggtgttgcc
aaattgcctttcattgacgagagaaagttgcttgctcaaactaggagacttgaaagcgct
ttaacggatgaagagaagaatcggaatagtgtgatgcttgatttgctttatacacattgt
gcccatccactgtctgcacaggttttctcttattaccaagttgctagtcaactacctcca
cgtgaaagaacttgttgggtgattgacacgaatgccagtggtgggatgaatggatacctc
tggttgtgtgagagaaatgtattccgtaatgtttttccatcaccaatcagtagtttgcca
gatatccagcataatcaagtcctgaatgtaacctatcttaatcctcagaagcatgaacat
gtccctagacctccaaagggtgtaatcattcccaaaaaggttctaagttccttggatatc
aaacctttccctaccttatggcatgaagacaataattcccggcgctatcatggcagagaa
cggcctcaagtacctagagctattgctggccctcttttgggagaagcagctcatcgtctt
gtgaagaacactcttaatatcaaacctaatggtggctcatcgtcggggttatttgatcaa
ccctattctcgcaatttcccgggacagcctatattctctcggccgcgacaagttggaagt
tcaggttatgaaacggggtatggtgaagatccaaattattcctacgggcactataataac
taccagggtgcatcaggtaggccaagatatcccaactcttcaaatggtatgccaggtgac
aacaggcaaacttcccgtggaaatgatatacagcatcaggagcgatacaacaatgtgagg
actggtatgtctgctttgacaattgaagagagcatgaggaatcgatctctcgacatgtta
actcctggtctttctcccatgatgatgccaaagatgctgaacgtcggaaactcggcaaac
caacagaattttgcccaggctactgacgctcttccttcaccaccacacaaatggatcaat
agagcgccaacgccaactgcaaatataatgtatgcaagacaacaagaaaattttacagga
ggagccaacgagaagcaagcgaaacaaatgtatctggcaaagactccagcattccagagt
gggtcaggttctggaagcaggcagtaa
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integrated database retrieval system
