Cucurbita moschata (crookneck pumpkin): 111450655
Help
Entry
111450655 CDS
T05248
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111450655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111450655
Spliceosome [BR:
cmos03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111450655
Complex C
U5 SnRNP specific factors
111450655
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
111450655
NCBI-ProteinID:
XP_022946650
UniProt:
A0A6J1G489
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIDSDKDSDIEDEDEDLMEKPDDDEGVSDGEDAGGASNGWITTSN
DVDMDNQIVLAEDKKYYPTAEEVYGDDVETLVMDEDELPLEQPIIKPVRNIKFEVGVKDS
STYVSNQFLVGLMSNPTLVRNVALVGHLHHGKTVFMDMLVEQTHHMSTFDIKGEKHLRYT
DTRIDEQERGISIKAVPMSLVLEDGNSKSYLCNIMDTPGHTNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAMRHAIQERLPIVVVINKVDKLITELKLPPRDAYYKLRHTLEVINNY
ISAASSTAGNVQVIDPAAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWG
DYYFHSDTRGFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHRKSVETTLSELGVTLSN
AAYKLNVRPLLRLACSSVFGGASGFTDMLVQHIPSPRDSSSRKVDHIYTGPKDSVIYKAM
KECDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPEDEEDMTVK
EVTKLWLYQARDRIPIAEAPPGSWVLIEGVDASIMKTATLSNVDYDEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENSVV
SLDWSRKKLGDFFQTKYEWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKNLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSSFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVAQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMMVELAQQAADLHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagcttgtatgatgagtttgggaactacatagggccagaaattgattctgac
aaggatagtgacatagaagatgaagatgaagaccttatggagaagcctgacgatgatgaa
ggtgtatcagatggtgaagacgcaggtggtgcttcaaatggttggattacaacgtctaat
gacgtcgatatggacaaccagattgtccttgctgaggacaaaaagtattatccaactgca
gaagaggtttatggtgatgatgttgaaacattggttatggatgaagatgaactaccactt
gagcaaccaatcattaagcctgttagaaatataaagtttgaggttggggtaaaagattct
agcacttacgtttcaaaccaatttctggtgggtctcatgtccaatccaacattggttcgc
aatgttgcacttgtaggccacttgcatcatggaaagacagttttcatggatatgttggtt
gagcaaacacatcacatgtcaacatttgatattaaaggagagaaacatctgaggtacaca
gatacaaggattgacgagcaggagagaggaatatcaattaaggcagttcctatgtcacta
gtcctcgaggacggcaattcaaaatcatacctttgcaatataatggacacccctggccat
accaatttttctgatgaaatgactgctgctcttagactggctgatggtgcagtgttgatt
gtcgatgctgctgaaggagttatggtcaatacagagagggctatgcgccatgcaattcag
gagcgcttgcccattgttgttgtaattaacaaggttgacaagctgattacagaactcaaa
ttgcccccaagggatgcatactataaattaaggcatacgttagaagttattaataactat
atatctgctgcctcatctactgctggaaatgtccaagtcattgacccagcggctggaaac
gtgtgttttgctagtgctactgcaggatggtcatttactttgcaatcatttgcaaagtta
tatgtcaaacttcatggaatcccttttgatgctgataagtttgcatctcgtctttgggga
gactactattttcattctgataccagaggattcaagaaaaaaccacctgcaagtggaggg
gaaaggtcatttgtccaatttgtgctagagccactatacaaaatatatagtcaagtcatt
ggtgaacataggaaaagtgtcgagactactctttcggagcttggtgttactcttagcaat
gcagcttacaagttgaatgtcaggcctttgctgagactggcttgtagttcagtttttggt
ggagcttccggattcactgacatgctagttcagcacataccttctcccagggattcttct
tctcggaaggttgatcatatttatactgggcctaaagactctgtgatatacaaagcaatg
aaggaatgtgatccttctgggcctttaatggtcaatgtcaccaaactatatcccaagtca
gactgcagtgtctttgatgcatttggtagggtttatagtggtaagattcaaacggggcag
actgttcgggtattgggtgaaggctattcaccagaggatgaggaagatatgacagtgaag
gaagtaacaaaattatggctttatcaagctcgagacaggattcccattgctgaggctcct
cctggatcttgggttctcattgagggagtggatgcatctattatgaaaactgcaactctg
tctaatgtagattacgatgaggacgtttacatattccgaccactacaattcaataccctt
cctgtggtgaaaacagctacagagcctctaaatccaagtgagttaccaaagatggtagag
ggtcttcggaagatcagcaaaagttatcctctggcaataactaaagttgaggaatctggt
gagcataccattttaggcacaggagagctgtacttggattcaattatgaaggatcttaga
gagctctattcggaagtagaggttaaggtagccgatccggtcgtctcattttgtgaaaca
gttgtagagtcttcttcgatgaaatgttttgctgagactcctaacaagaagaataaaata
accatgatcgcagagccgttggagagaggacttgcagaagacattgagaatagtgtagta
agtcttgattggtcaagaaagaaactcggggatttcttccagacaaaatatgaatgggat
ttgctggctgcaaggtccatatgggcatttggcccagataagcagggacctaacattcta
ttagatgatacgctctcttctgaagtagacaagaatttgctcaatgccgtcaaggattcc
attgttcaagggtttcaatggggggctagagaaggaccactttgtgatgaacccatcaga
aatgtaaagttcaaaatcgttgatgcaagaattgcacctgagccattgcatcgtgggtct
ggtcagatcattcccacagctcgacgtgtggcctattcatcttttcttatggcaacccca
cgacttatggaaccagtatactatgttgagatacaaacaccaattgattgtgtctctgca
atctatactgtcctgtcccgaaggcgtggacatgttacagctgatgttgctcaaccaggg
actccagcttacatcgtcaaggcatttttacctgttatagaatcttttggttttgaaacg
gacttgcggtatcacacacaaggccaagctttttgtctctccgtgtttgaccattgggca
atcgttcctggtgatccccttgataagagcattgttttgcgacctcttgagccagcacca
atacaacaccttgctcgtgaattcatggtgaagacaaggcgtagaaagggaatgagcgag
gatgtgagcataaacaagttctttgacgaggccatgatggtcgagctggctcagcaagcc
gccgatcttcatcaacaaatgatataa
DBGET
integrated database retrieval system
