Cucurbita moschata (crookneck pumpkin): 111462046
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Entry
111462046 CDS
T05248
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111462046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111462046
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111462046
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA
AAA_25
AAA_23
AAA_15
Arf
Sf6_terminase
AAA_30
ORC-CDC6-like
AAA_7
nSTAND3
Zeta_toxin
AAA_28
TsaE
Motif
Other DBs
NCBI-GeneID:
111462046
NCBI-ProteinID:
XP_022961477
UniProt:
A0A6J1HAA8
LinkDB
All DBs
Position
Unknown
AA seq
330 aa
AA seq
DB search
MPTTMPGSTPTIVIDALRFTYPGIDGHPPPGSKPLIDDFSLTLNAGDRCLLVGSNGAGKT
TILKILGGKHMVEPHMVRVLGRSAFHDTALTVSGDLCYLGGEWRRDVAFAGFEVPIQMAV
SAEKLIFGVGGVDPQRRAELINILDIDLSWTMHKVSDGQRRRVQICMGLLKAYKVLLLDE
ITVDLDVLARANLLKFLRRECEERGATIIYATHIFDGLEDWPSHMVYVSHGKLQISMPMD
KIKEISQLSLMRTVESWLRKERDEERKKRRERKASGLPEFEERIEESRVTGDPARAAVRV
MNNGWAAGRLHSTVAGEENFLLSSNRVLRQ
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccacgatgcctggttccacccccaccatcgtcatcgacgccctccgattcacc
taccctggaatcgacggccatcctccgcctggttccaagcccctcatcgatgatttctcc
ctcactctcaacgctggcgatcgttgccttcttgtcggatccaatggcgctgggaagacc
acgatcttgaagattttgggagggaagcatatggtggaacctcatatggttcgtgtgctt
ggaagatcggcgtttcacgatactgctttgactgtttctggcgatctctgttatctagga
ggagagtggaggagagatgtggcgtttgcaggatttgaggttcccattcaaatggctgtg
tctgcagagaagctaatttttggagtaggcggggttgatcctcaaaggagagctgaactc
attaatatattagacattgatttatcatggacgatgcacaaggtatctgatggtcagaga
agacgggtgcaaatatgcatgggtcttctgaaggcatataaggttcttcttcttgatgag
ataactgtggatcttgacgtgctggcaagggcgaaccttttgaagtttctgagaagggaa
tgtgaagagcgtggcgctacaattatctacgccacacatatatttgatggtctcgaagac
tggccatcacatatggtctatgtgtcgcatgggaagttgcagatctcaatgccaatggat
aaaattaaggagattagccagttgtctcttatgagaacagttgagagttggctaaggaag
gagcgagacgaggagaggaaaaagaggagggaaagaaaggcaagtggtctgcctgaattt
gaagaaagaatagaggaaagccgtgtgacgggggatccagcccgcgctgctgttcgagtc
atgaacaacggctgggcagcaggacggcttcactccaccgtagccggagaagagaacttc
ttgttgagctctaacagagttctcagacagtaa
DBGET
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