Chamaesiphon minutus: Cha6605_5251
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Entry
Cha6605_5251 CDS
T02414
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cmp
Chamaesiphon minutus
Pathway
cmp03030
DNA replication
cmp03410
Base excision repair
cmp03420
Nucleotide excision repair
cmp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cha6605_5251
03410 Base excision repair
Cha6605_5251
03420 Nucleotide excision repair
Cha6605_5251
03430 Mismatch repair
Cha6605_5251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmp03032
]
Cha6605_5251
03400 DNA repair and recombination proteins [BR:
cmp03400
]
Cha6605_5251
Enzymes [BR:
cmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cha6605_5251
DNA replication proteins [BR:
cmp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cha6605_5251
DNA repair and recombination proteins [BR:
cmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cha6605_5251
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cha6605_5251
MMR (mismatch excision repair)
DNA ligase
Cha6605_5251
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cha6605_5251
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
BRCT_2
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
Dna2
ID
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AFY96139
UniProt:
K9UPL0
LinkDB
All DBs
Position
complement(5544880..5546907)
Genome browser
AA seq
675 aa
AA seq
DB search
MTPEIRTRTEQLREQLQSAGYAYYVLDNPVMEDAVYDRLYRELQDLESQYPELVTADSPT
QRVGERPTAGFVSVKHNISLYSLENAFDMAEFAKWEAGWQRNMGSKESAEYVCELKIDGS
AIALTYENGLLVRGATRGDGDTGEDITQNIKTIRSIPLKLKLENPPPVVEVRGEAFLPIA
VFDRLNQERATAGEQLLANPRNAAAGTLRQLDPKMVAQRQLDFFAYTLQIPTTTPQTELH
SHLESLELLERMGFKVNPHRELCADAANVGAYYDRWNTERLNLPYMTDGVVVKINSFALQ
QELGFTNKFPRWAVALKYPAEEAPTRVLDISVNVGRTGAITPLAHLEPVQLGGTTVQRAT
LHNGDLIEQLDIRIGDTVIVCKAGEIIPKVVRVLTDLRPPGTSAFKMPSNCPVCDSSVTK
SASEAVLRCNNPSCAAILKGTLVHWVSRDALDINGMGEKLIEQLVDSKLVDSVADLYELT
IEKLMTLDRMGEKSATKIVEGIASSKSRPWSRVLYGLGIRQIGRNGSNILTERFPSIELL
LQATTADMEGIHDVGFETAQSVSNWLKQPVNLELIDRLKAAGLQFDRSLEANLSSVISSI
LADKTFVITGTLPTLKRDEAKDLIESHGGKVSDSISTKTHYLVAGEKAGSKLAKAEKLGV
KVISEAELLELLTSG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgacaccagaaattcgtacccgtacagagcaacttcgagaacagcttcagtcggctgga
tatgcctattatgtcctcgacaatcccgtgatggaagatgccgtgtacgatcggttgtat
cgggaactgcaagatttagagagtcaatatcccgagctggtgacggcggatagtcccacg
cagcgagttggcgagcgtccgactgcgggttttgtttcggtcaagcataatatttcgctt
tacagcctggaaaatgcttttgacatggcggagtttgccaagtgggaagcggggtggcag
cggaatatggggagtaaggagagtgcggaatatgtctgcgagttaaagatcgatggttcg
gcgatcgcgctgacgtatgagaatggtttattagtgcggggggcgactcgcggcgatggc
gatacgggcgaagatattacccagaatatcaaaaccattcgatcgattccgctcaagtta
aagttagaaaatccgccgccagtggtagaagtgcgaggtgaggcttttttaccgattgcg
gtattcgataggctcaatcaggaacgagcaacagcaggcgaacaattactcgccaatcca
cgtaacgccgcagcaggcacattacgccaactagaccccaaaatggtcgcccaacggcaa
ctagatttttttgcatatacgctccagattccaacgactacgccacaaaccgaactccac
agccatttagaatcgctagaactgctcgaacggatgggatttaaggtcaatccccatcgc
gaattatgtgccgatgctgccaatgtgggtgcatattacgatcgctggaatacggaacgt
ttaaacttgccatacatgactgatggtgtcgttgtcaaaattaactcgttcgcgctgcaa
caggagttaggctttaccaacaagtttccgcgctgggcggtagctcttaaatatcccgcc
gaagaagcaccgactagagtcttagatattagtgtaaatgtgggcagaacgggggcgatt
acgcccttggcgcacctcgaaccagtgcaattgggcggaaccacagttcagcgggcaacg
ctgcacaatggcgatctcatcgagcaattagatatcagaatcggcgacacagttatcgtc
tgcaaagctggcgaaattattcccaaagtcgtgcgcgtactgacagatttgcgcccgcct
gggacttcagcttttaaaatgcctagtaattgccccgtgtgcgattcgagcgttactaag
tcggcaagcgaagcagtattgcgctgcaataatccgagctgtgcggcaattcttaagggt
acgttggtgcattgggtaagtcgggatgctctcgatatcaatggaatgggggaaaagtta
atcgagcaattagtcgatagtaaattggtcgattcagtagccgatttatacgagctgacg
atcgaaaagttaatgaccttagaccggatgggcgaaaagtcagcgactaaaattgtcgaa
gggatcgctagttccaaatcgcgaccttggtcgcgagtattatatggattggggattcgc
caaatcggtcgcaatggatcgaatatcttgaccgaaaggtttccctcgatcgaattatta
ttacaagcgacgaccgccgacatggaaggtattcatgatgttggttttgaaaccgctcaa
tcagtcagcaactggctcaaacaacctgtcaatttagagttaatcgatcgactaaaagcc
gcaggtctacagttcgatcgatctttagaagctaatcttagttctgtcattagttcgatc
ttggcagataaaactttcgttatcacgggtactttgccgacgctcaaacgagatgaagcc
aaagatttaattgagagtcatggcgggaaagtttcagattcaattagtactaaaactcac
tacttagtcgcaggcgaaaaggctggatcgaagttagccaaggccgaaaagctgggggtt
aaagtaatttctgaagctgagttgctggagttattaacgagcggatga
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